RnoINT0066338 @ rn6
Intron Retention
Gene
ENSRNOG00000015051 | Golga7b
Description
golgin A7 family, member B [Source:RGD Symbol;Acc:1583839]
Coordinates
chr1:261512735-261513062:+
Coord C1 exon
chr1:261512735-261512887
Coord A exon
chr1:261512888-261512960
Coord C2 exon
chr1:261512961-261513062
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCG
5' ss Score
5.74
3' ss Seq
AGGGACCCCTGTTTCTGCAGGTT
3' ss Score
7.48
Exon sequences
Seq C1 exon
ATTGAGCGGCAGCTCTTCGAGGAGACTGTGAAGACCCTCAATGGTTTTTATGCGGAGGCCGAGAAGATTGGGGGCAGCTCCTACCTGGAGGGCTGCTTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq A exon
GTGCCGACTCTCTATCTCCCCTTCCCCAGCTGCCTTGCCACAGACTCATCTTTAGGGACCCCTGTTTCTGCAG
Seq C2 exon
GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCCGTGGAACGCGGAATGAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015051:ENSRNOT00000020390:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGACTGTGAAGACCCT
R:
TGCTCCTGGATGTAACGGGAA
Band lengths:
171-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]