HsaINT0070575 @ hg38
Intron Retention
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97863930-97864269:+
Coord C1 exon
chr10:97863930-97864082
Coord A exon
chr10:97864083-97864167
Coord C2 exon
chr10:97864168-97864269
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGCC
5' ss Score
3.58
3' ss Seq
TCTGGCTCCTCTTTTTGCAGGTT
3' ss Score
10.98
Exon sequences
Seq C1 exon
ATCGAGCGGCAGCTCTTTGAAGAGACTGTGAAGACCCTCAACGGATTTTACGCAGAGGCTGAGAAGATTGGGGGCAGCTCCTACCTCGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq A exon
GTGGCCCCTCCCGCCCCACCGTGCATCCCTTCCCTCAGGGCTGCCCTGTGGCATGCTCATCCTTGTCTGGCTCCTCTTTTTGCAG
Seq C2 exon
GTTCTCAAGAAGATTTCCCGCTACATCCAGGAGCAGAATGAGAAGATCTTTGCACCTCGAGGCCTCCTACTTACAGACCCTGTGGAGCGTGGGATGAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265:ENST00000370602:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATTTTACGCAGAGGCTG
R:
GCCTCGAGGTGCAAAGATCTT
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development