MmuINT0072244 @ mm9
Intron Retention
Gene
ENSMUSG00000042532 | Golga7b
Description
golgi autoantigen, golgin subfamily a, 7B [Source:MGI Symbol;Acc:MGI:1918396]
Coordinates
chr19:42341241-42341568:+
Coord C1 exon
chr19:42341241-42341393
Coord A exon
chr19:42341394-42341466
Coord C2 exon
chr19:42341467-42341568
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
AAGGACCCCTGTTTCTGCAGGTT
3' ss Score
7.42
Exon sequences
Seq C1 exon
ATTGAGCGGCAGCTCTTTGAGGAGACGGTGAAGACCCTCAATGGTTTTTATGCGGAGGCTGAGAAGATCGGGGGCAGCTCCTATCTGGAGGGCTGCCTGGCCTGCGCCACGGCCTACTTCATCTTCCTCTGCATGGAGACCCACTATGAGAAG
Seq A exon
GTGTGGATTCCCCATCTCCCCTTCCCCAGCTACCTTGCCACAGGCTCGTCTTTAAGGACCCCTGTTTCTGCAG
Seq C2 exon
GTTCTCAAGAAGATTTCCCGTTACATCCAGGAGCAGAATGAGAAGGTCTTTGCTCCCCGAGGGCTCCTGCTCACGGATCCGGTGGAACGCGGAATGAGGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042532-Golga7b:NM_027694:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTTTGAGGAGACGGTGA
R:
TGCTCCTGGATGTAACGGGAA
Band lengths:
178-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: