RnoINT0066332 @ rn6
Intron Retention
Gene
ENSRNOG00000017956 | Golga7
Description
golgin A7 [Source:RGD Symbol;Acc:1359725]
Coordinates
chr16:73570337-73574908:+
Coord C1 exon
chr16:73570337-73570489
Coord A exon
chr16:73570490-73574806
Coord C2 exon
chr16:73574807-73574908
Length
4317 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GTGGTGTTTCCTTCTGACAGGTC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GTTGATAGACAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAACCTTTACGCAGAAGCGGAGAAGCTTGGGGGCCAGTCATATCTTGAAGGCTGTCTGGCCTGTTTAACAGCATACACCATCTTCTTATGCATGGAGACTCATTACGAGAAG
Seq A exon
GTAAGGCCACATTGTGTTCAGACAGATCTCTAGACATCGTGAGAAAAGATAGTTTATATATTAACAGTTGATTTAAACTTTAGAAATATTTGTAATAATAATTCAGATTTTGCTATTGCTCTTGTGTCCAGAGCACATAGGAGTAGGTCCTACATGTTTTTGAAATAGGTCAAAATGTGTGTGTCTGCTTGGGGTGACAGCCAGTGTTCCAACTCTACATGCAAAGTTAATGTAGAAAATCTGGATGTCTCCTTGTCTCCAGCTTTTTGAGAATGTTTTTCACAAAATTTCCATTTTCAGTCATAGCCTCCAACTTGAGTTCTTTTCTCCTCTTTCCAGCTGCCTACCAGATATAGAGTTGCTAGTTGTCAACTGGAAATGTTCAGAATGCAAACCCCCATCTCCCCGTCCTGTTCAATAGCCCTCTCTGGCTGAGACATGAAGAGGGAGCCTAGCTGTAAAGGCTGCTGTTTTCTGTTCCCCTTTGTTACCGGGTCATGGTCTTCTCTGCTGTCGTCTCTGTTGACGCTCCCCTGTCTTGCTCCTAGACTGCTCAGCGCTGTCCTAACGCATTTCTCCTTGCCCTTTGCTTTTCCAGCTCACTTTCCACTGTCTTTAGAAAACACAGCCTTACTTCCTCTGCTACTCCTAAGTCACGACCTCCTTCTTCCCCAGTTATGACTGGAACGAGTAAGATCCTCCTGAAGCTGATATCAGGTTGCCTTTCGAGCTCCATCTCCCACGCCTTCCTTCACATGTTTCAACAGACAGACTGGATTAGAAGTGTAGACTTTATCTCTGTGGCAGGAGCCACTCAGAGAGAGCACAGATGTCAGGCAGCACTGATTCTAAGTAGGCTTTGGGTGTGTGGGGAAAGAGCCCGAGAGTGGCAATGGACACGCAAGGTAGGGAGCTCCACAGAAGCCCACGCTGAGACTCCTTGGATTAGGAGTGTGGCAGTTTGGGTGGAAGGAAGGGAAGGATTTCAAAGGATATGCTGATAGTAGAACCAGGATTCAGGGAGGAGTTAACTTTAAGGAAAAGGGGAAGTTGAATTCCCATAGATTGAAAACATAGTCATCCAGCAATGCTCTTAAGGAAGCGTTTCTGCCAGGGATGGTAGAGGTTTATCCTTTGGAGTGACAGCTGTAAGAGGGAATTAGTAATTAGGTACAGACAATTAGTAATTGGCTACAGGATCTTGGGTACATTCATTTCTTGGAGGTCTCTCAACTGTAAAGTAGATCTTGGAATTAATATGTTTCCTCACATATAGTAAATGTTTAATAAACACTTTCTTGAAGTAGTTTTTAAAAATATTCTTATGGATTTATATATTGTATTGCACACAAACATGCCAGGGCACCGGTGGAGCCCAGAGAAGAACCACAGGGACAGGATCTTGTCTTCCACTGTGTCTGACTGAGACAGGCTCTCTCTGTTGTTCACTGCTGCATCGTCCCCGCTAGCTGGCTCTCAAGCTTCCTGTCTCCTGTAAGGTGTGCTGAGACTCAGGCTTCTGTCCCCTGCTTTAAACAAGCTCTGAGCATTGAGCTCAGGTCACGAGGCTTGCACAGCAAACCGTCTCCCCATCCCCTGTCCTCTAGTTCCTCATGAAAAGGCACGATTAATCAATTAAACACCAGTGTTTTAAACATTAAGATTTCTTATTCTACAAAGGGTAAACTAAATATAAAGTTTACACTTTATTGTGTGGGTTAAATTTCTTGAAATTGTCAATAATCCTTTTAAAACTTGCGTGGACAGTTATGTGCTTTGTTGCTTATAATATGCTATTTATTGTTAAGACGATGGTGTTATTTCTCCATTGTTGCTATTAGAATTAGAGAACAATTGAGCTTCTAAGAGGTTTTCCTCACTGCCTGCTTTGTTTACCAACTAGAATGCATCTCTTCTGCCTGTGGGCTGTAATTAGAAGGACACTTGAGTATTTTCTGAAAATGCCAAGATCCTGTTCTCTACTGAGCCTGGCTCATGCAGTTTTGTAGCAGCCTGTTTACAGTCACGTTCCTGGGAAGAGCAGTTGTCTATTCTGGAAGTTGGATAATGTTGGATTCTGTACATATAACACTAGTTGAGGTTGTATTGGGTGTTTGGAAATAAGGTGATTTTGTTAAATATTTTGGTTTGTTTGACACTGATTTAAAGTGTAAGAGTCAGTGAGATGGCTCAGTGGATAGAGGAGCTTACGTGCAGGCCTGAAGACCCGAGTGTGAGCCGTGCGTTCTCCAGGATACTCCTGTAGTTGTGCTCTGTCCTTCACATACATGCCCTGGCTCAGGCACAAAAATCACACACACATACACATAAAAAAATAATGTAAAGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCTAAAAAAAAAAGAAAAAGAAAAATGATAAAAAATAATGTAAGCATGAATAAAATGTCATCTTAAATTCAGGTGCGGTTTGGAGTGGCTGCCCCTATGAACATCTTCTGTTACTAGGAATGAAGCATCCAGAAGCAACTTGTATTGCCTTCTCCAAAATAGTATATGATTTGGAATTTTCCTTTTAGAGAGGGAGGTAGTAAAGGGAGAGAAGAGAGAGAATGAGAATGGCTCACTTGTTTCTGAGCTAATAGCCAGATGCACATAAATGATACTAAAATTTAAACAGAATCTTTGTCCAATAAAATTATGCTTGAATCAAATAATAGGAATGCTCTTTCCTGGATAGTGGCCTGAGGCCAAGGAGGAAAGCTGGTTTAAAAGAACTCATTCTTAAACCAACATCCACGCACACACCTCTGTCCCTCTGCTGTTACTGCTCTGGGGCTGAGGGAGGCCTGCTCTCCAGTTTCCCGTTCAGGTGATGAGGTAAGGAGATTGGAAAGATGATTGGAAGTCCTGAGCTGAGCCAGTTTGTGGGCCTTTCTCCCACTCATTCACTTAGGGTTATTGATGAACTGAAGACAATGCCCGAGGAGTTTGCTCATAATGACCAGCATAGTTCAGTTCTTAGAGCTGAAAATAACAGCAAACTCACATTGCTTCAGATAATGAGGCTCAAAAAGTTGCCATCTTTACAAATAGTGTTTTTAATTTACTGAAGAACCATGTAGATTGCTCTTTCAATAATGTCTCTCCTCACCTAAAAAGGAATAAGCCTGAGATTATGTTATCTGCAAAGACAGACTCTAAATCGCATGGCACATAAATATTTATTTATGTATTTCCATTCAGTAAGTAGTAAACTATTCAAACCTCATCGAGCTTTGTATTTTAAGATAGTTTACACTAAAATCTCTCAGTTGTAACGTCTCCCTCCTTTACTGCACTCCTGGTACATCGGCACTCTTAGCCCCTGGCGAACGCTCGACCTGCAGCGCCACTTTGCTTGCATACGTTGCTTTCCCTGTCTGTTTTGTGAGCAAGTTTGTCCCTCACCATGTTCTCACGGTGAAGATCTAAAGCTGTACTGTGTAACTTAAAGACTAAATGGCAGTCCTTTAGAGAGGGGCGGGGATGACTTTGAGCTGAGGTCGAGCGTGTAGCCCCTTGACTTTAGAGAGCCACTCAGACATATTTCTCACTTTCTCAGAATTGCCCTTATTGAAGCTGAGGATTTGGCTGTTTCTCAAGGTTCCTTTGTGTCCTCTCTGGGTTTTGTCTACATTTGTTTTGACTTTTTCAAGCTTAATACTACATTCATAATTTGAAGTTCTGTCTAGGAAATAAGAGCAAACTACAGAGCATCACTGTATGCAAACGCAGAAATGATTCGAGCCATCTGTGGTCAGAAACCCCACCAGCACTGACGTCTGTGTGCTCTACAAAGAAAAGGGGCCTCCAGCAGAGGGACAGAGCTCCCTTTGTCATAGGCCAAGTCATTACTTGAAATGGCTGAAAACACACAAAAGGGAGGAAAGTAGTTCTTAGGCAGGAAGACCGAGAGCAAGCCTCGTATTAGAAGAGTCCATCTCAGCTGCTGGCAGCATATGAGTAGTAGCAGGAAAACGTGTGTGTGTGTAAGTGACTTAGTCCCTGTACAGAATGGAGGTGAGAGGGAAGGGCTGCTGCTCACTGCATGTGTGTGCGTCCACTGCACTGGAGTCTAGCACACACCCACTGTGTCTGTACAGCGGATAGCAGCCAGACAACCCAGACTGTTCTGCCTTGTAGAAACCAGTCTGACTTGCATTCAAAGACAACTTGCTGTCTGAATATTCTGAGATCTAGCTAATGCTTCTGATGAAATCTATAAAAAGCTGTGGTGTTTCCTTCTGACAG
Seq C2 exon
GTCTTGAAGAAAGTCTCCAAATATATTCAAGAACAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTAACAGACCCCATTGAGAGAGGACTTCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017956:ENSRNOT00000030960:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]