DreINT0073855 @ danRer10
Intron Retention
Gene
ENSDARG00000057676 | golga7
Description
golgin A7 [Source:ZFIN;Acc:ZDB-GENE-040625-142]
Coordinates
chr10:20411198-20411529:+
Coord C1 exon
chr10:20411198-20411350
Coord A exon
chr10:20411351-20411427
Coord C2 exon
chr10:20411428-20411529
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGA
5' ss Score
4.23
3' ss Seq
TATTATGGTGTTTTGTTTAGGTG
3' ss Score
9.32
Exon sequences
Seq C1 exon
ATTGACAAGGTGCAGTTTGAGGAAACCATACAGACCCTGAATAATCTCTATGCAGAAGCAGAGAAGCTGGGCGGCAGGTCGTACCTGGAGGGCTGTTTGGCCTGTCTCACTGCGTACACAATCTTCCTCTGCATGGAAACACACTATGAGAAA
Seq A exon
GTGAGATATCATCATATAGTGTGGATATCATCAATATGACTTAGATATGGAATTCAGTATTATGGTGTTTTGTTTAG
Seq C2 exon
GTGCTGAAAAAGATTGCTAAGTTCATCCAGGAGCAAAATGAGAAGATCTACGCTCCTCTTGGGCTTCTTTTGACCGACCCCATTGAGAGGGGGCTCAGGGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057676:ENSDART00000080395:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100),PF130581=DUF3920=FE(60.2=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100),PF130581=DUF3920=PD(20.5=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGCAGAGAAGCTGGGC
R:
AAGCCCAAGAGGAGCGTAGAT
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]