MmuINT1019938 @ mm10
Intron Retention
Gene
ENSMUSG00000015341 | Golga7
Description
golgi autoantigen, golgin subfamily a, 7 [Source:MGI Symbol;Acc:MGI:1931029]
Coordinates
chr8:23245863-23250401:-
Coord C1 exon
chr8:23250249-23250401
Coord A exon
chr8:23245965-23250248
Coord C2 exon
chr8:23245863-23245964
Length
4284 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TGTGGTGTTTCCTCTGGCAGGTC
3' ss Score
10.84
Exon sequences
Seq C1 exon
ATTGACAGACAGCAGTTTGAAGAAACAGTTCGAACTCTAAATAATCTTTATGCAGAAGCAGAGAAACTTGGGGGCCAGTCGTATCTTGAAGGCTGTTTGGCTTGTTTAACAGCATACACCATCTTCTTATGCATGGAAACTCATTATGAGAAG
Seq A exon
GTATGGCTACATTTGTGTTCAGTAAAATCTCTAAATACCATGAAAGAAGATAAGTCTCTACATATTAACAGTTGCTTTAAACTTGAGAAACCTCTATATAATTCAGATTTTGTTATTGCCCTTACTGTCCAGAGCACACAGAAGTGGGTCCTAAGTGTTTGTGAAATAGGTCAGCATGTACAAGTCTGCTTGGGGTGACAGGGCAGAGTTCAGACTCTACATGCAAAGTTAGTGCGGAAACTCAGTATGGCTCCATGTCTCCAGCTCTTTTGAGTCTTTTTTCTTCCCCCCTAAAGTTTCCGTTTTCGGTCATAGCCTCCAACTTGAGTCCTTCTCTCTGCAGCTGCCTGCCAGCTGGAGGGTTGCTGTTCGTCAGCTTGTAATGCTGAGAATGGAAACTCGCATCTCCCCATCCTGTTCAGTAGCCCCCCTCTCTGACTGCGAGACAGGGAGCTGGAGCATAGCTGGGAAGGGCTGCGCTGTTTTCAGTTGTCCCCTTTGTTATCGTGTCTCTGGCGATGCTCCGGCTTGCTCCTAGCCTGTCCAGTGCTGTCCTAACGCATCTCTCCTTGCTCTTTGCTTTCCAGCTCGCTTCCCACTGTCTTCAGAAAGCACAGCCTTACTTCCTCTGCCACTCCTAAGTCCTGACCTCCTCCTTTCCCCAGTTACGACTGGATCAGGAAAGATCCCCTGAAGCTGATGTCCAGTTGCCTCTCTAGCTCCATCTCCCACACCATTCCTCCATGTGTTTCTGCAGACAGGCAGCTGGATTAGAAGTGTAGATCTTATCTCTATAGCAGCAGCCACTCAGATTTCACGCAGAGCACAGATATCAGAAAGCAATGATTCTAAGTAGGCTTTGGGTGTGTGGGAAAAGAGCCCGAGAGAGGGAATGGTCGCACAAGTGAGGGAGCTCCACAGAAGCCCGAGCTGAGTCTGCTCGGATTAGGAGCGTGGCAGTTTGGGAGGAAGGAAAGGAATGATTTCAAAGGATATGCTGATGCTAGAACCAGGATTCAGGGAGGAGCCAACTTTAACAAGAAGAGGAAGTTGAACTCCCATAGAAAGAACATGGCCATCCAGCCACGCTCTTACGGAAGCATGTTTCTGGTGGAGTTACATCCTTTGGAGTGACAGTTGTAAGAGGGAAGTAGTATTGAGTACCCGACAAGTGATTCTGGCTATAGGATCTTGGATACATTCATTTCTTGGAAATCTCTCAACTATAAAATAGATCTTGGAATTAATATATAGCCTTGCATATAGTAAATATTTAATAAATATTCCCTTGAAGTAGATTTTAAAAATATTTTTATGTGTTTATATATTATATTGCACATATACACATGCCAGGGCACCAGTAGAGACCAGAGAACAACCTCGGGCCAGGCCCCTGTCCTCCGCTGTGTCTGACTGAGACTGGCTGGCTCTCTTTCTGTTGTTTGCCTCTGTGTTGTCCCAGGTAGCTGGCACTCAAGCCCCCTGTCTCCCGTGGGCGTGCTGGACCATAGATGCTTGTGCTTCTGTTTCCAGCTTCTGCATGCGCTCCGGGGACCTCAGCTCAGGTCACCCCATCCCATGTCCGCTAGTTCTTTATGAAAAGGCAAGAATGAATCCTTTAGACACCAGTGTTTTAAACATTAAGATTTCTTATTCTACAAAGAGTAAACCAGATATAATGTTTACACTTTATCATGTGGGTTAAATTTCTTAAAATTGCCAATAATCCTTTTAAAGCTTGCTTGAACAATTATCCACTTTGTTACTTGTAATATGCTATTTATTGATTTTTTTTTTCAGTAAAGATAAAGAGGATAGTGTTAGTTCTTAACAATTGGGCTTGGAGGAGGTTTTCCTCACTGTCTGCTTTGTTTATCAACTAGAATGCATCCCTTCTGCCTGGGCTGTAATTAGAACACTTAAGTCTTTTCTGAAAATGCCAAGGCTCTGTCCTCAGCCTGGCTCGTGCACCTTTCTTGCAGCCCGTCTAGAGCCCCGTTCCCGGCAGGGACAGTTGTCTGTTCTGGAGGTGTCATAATGGTTCACTCTGTACTCTAGGTGAGGTTGTAGTGGGTGTTTGGAAACAAGGTCATTTCGTTTAATACTTTGGTTTGTTTGACATTGCTTTGCACTGTAAGAGCCGGTGAGATGGCTCAGTGGATAGAGGAGCTTATGTGTAGGCCTGATGCTCTGAGTCTGAGCCCTGGATTCTGCAGGGTGCCTGGAGAGAAGTGACTCCCGATAACTGTGCTCTGTCCTTCACACACATGCCCTGCCTCGGGCACACACTCATACACACATAGACATGAAATGTTAATTTAAGTATGATTAAAATGTCATCTGAACGTCTTTGGGGACAGAAGTGTCAGGTGCAGTTTGGAATAGCTGCCCAAATGAACTCTAGGGCATTACCAGAGTGGAGTTACTAGGAATGGAGAGTCTAGAAACAACTTTTATTATTTTCTCCAAAATAAGGATTTGGAATTTTCCTTTTAGAGAGGGAGGGAGTAAAGGGGGAGACAGGAGAGAGAATGAGAATGGCTCATTTGTTTCTGAACTAATAGCCAGATGCACATAAATGGTTCTAAAATTTAAACAGGAACTTTGCCCAATAAAGTTAGGCTTAAATCAAATAAAAGGAATGTCATTCTTGCTAATGACCTGTGTCCAAGAGGAAAGCTGTTTTAAAGCAGCCATTCCTAAAGCCATCCATGCATCCATGATGTGTGTCCACCACTGCTCTGGGGCTGAGGCAGACATGGTCTCGGGTTTCTCATTCTGGTGCCCAAGGAAAGGAAGTTGGAAAGATGACTGAAAGTCCTGAGCTGAGCCTGCTTACGGGCTCCTTCCTTCCACTTGTTAATTTAGGGTTATTGACAAACTGGGAAGATAAAGCCTGAGGGGTTTGCTCATAATGACCAGGAATAGTTCAGATTCTTCTAAGCTGAAAATAAGACACTGATGCTCACATTGCTTCAGGTAATTAGACTTCAAAAATTGTCATTTTTAGAAATACTGTTTTTAATTCACTGAAGAACCATGTAGATTGCTCTTTCAATAATATCCATTCACACCAGACTCTAAATAGCATATACATAAATAGTTATTTATTTCCTTTCAATAAGAAAACTAATCAAACCTCATAGAGCTTTGTATTTTAAGATAGTTTACACTAAAATATCTCAGCTGTAACATCTCCCTCCTTCATTGCCTATCCTGTATGTTTGTCTGTACTCGTATCCAGTGCTCAGCGTGGGGCACATCAGTGCCCTTAGTGGACGCCCGACATGCAGTGATGCTTTGTGTTCCTACATTGCTTTTCCTCTCTCTGTTGTGAGCAAGTTTGTACACTCATCATTTTCTCACAGGGAAAGTCTAAGGAAGTGCTGGGTAACTTAGCCGTCCTCTGGAGTGAGGCTCTGCTGACTGGAACCTGAAGTAGAGCATGGAGCCCCTGACGGCAGAGAACACCGCTGAGATACTTTCTCACACTGTCGGAACCGCCCTTAGTAAAGCTGACGATTTGGCTGTTTCTCAAAGTTCCTTTGTGTCCTATCTGGGTTTTGTCTACATTTGTTTTGACTTTTACAAGCTTAATACTAAATTTATAATTTGAAGTTCCTGTCTAGGAAGTAAGAGCAAAACTACGGCGTATCAGTGTATGCAAACATAGAGATGATTCGAGACATCTGTGCCCCGAGGCTGCCCCAGCACTGATATCTGTGTGCTCTCCACATGGAATGAGCATCCCAGCAGAGTGACAGAGCTCCCTTTTGTTACAGACCAAGCCATTACTTGAAATGCTGAAAACACACAAAGGGAGAAAAGATAGTTCTTACACAGGAGACCGAGAGTGAGCCTCACTTGAGAAGAGGCCGTCTTAACTGATGGCAGCTTATGGATAGTAGGAGATGGACGTGTGTGTAAGCAGCTTAGTCCCTGTAGCAGGGCAGAGGTGAGGGGAAGGGTGGCTTCTCACTGAATGTGTGTGTGTTTGCACTGTCCTGCGCTCCAGCACAGTACACAGTGTGTCCCGTGTACAGCTGATAACTGTGTCCCGTGTACAGCTGATAACTGTGTCCTGTGTACAGCTGATAACTGTATCCTGTGTACAGCTGATAACTGTATCCTGTGTATAGCTGACAGCAGCCAGGTAACCCAGTCTCTTGTTTGCTTTACAGAAATCAACATGACTTGCATTGAAAGCCAACTCACTGAATATTTTGAGATCTAGCTAACAGGTCAGATGGAATGTGTTAAAAGCTGTGGTGTTTCCTCTGGCAG
Seq C2 exon
GTCTTGAAGAAAGTCTCCAAATACATTCAAGAACAGAATGAGAAGATATATGCTCCCCAAGGCCTCCTCCTAACAGACCCCATTGAGAGAGGACTTCGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015341:ENSMUST00000051094:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF102564=Erf4=FE(43.5=100)
A:
NA
C2:
PF102564=Erf4=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types