MmuINT0073610 @ mm9
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101059263-101059524:+
Coord C1 exon
chr15:101059263-101059317
Coord A exon
chr15:101059318-101059421
Coord C2 exon
chr15:101059422-101059524
Length
104 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
GTTCGGTCTCTTGTTTACAGACA
3' ss Score
7.9
Exon sequences
Seq C1 exon
GAAGGTTCTAACTTTGGAGAAAGGGGACAACCAGACCTTTGGCTTCGAGATCCAG
Seq A exon
GTGTGAAAAACTGGGCAAAGAAGCGGGAGGATGGGAGGACAGTTTGGAGGATGGAGCAGGTCTGCTTGCCTCTGCCGAGTGAACGTTCGGTCTCTTGTTTACAG
Seq C2 exon
ACATATGGCCTTCACCACCGAGAGGAGCAGCGTGTAGAGATGGTGACCTTCGTCTGCCGAGTTCATGAATCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-Grasp:NM_019518:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
NA
C2:
PF0059519=PDZ=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTCTAACTTTGGAGAAAGGGG
R:
CTGGGCAGGGCTGGATTCAT
Band lengths:
138-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: