RnoINT0067290 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142874091-142874348:+
Coord C1 exon
chr7:142874091-142874145
Coord A exon
chr7:142874146-142874245
Coord C2 exon
chr7:142874246-142874348
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
ATCCGGGCATTTGTTCACAGACT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAAGGTTCTGACTTTGGAGAAGGGAGACAACCAGACCTTTGGCTTCGAGATCCAG
Seq A exon
GTGTGAAAGACTGGGCACAGAGAGGGGAGGGTTGGGAGGACAGTTTGGAGGACTGATACGTGTGCTTGCCTCTGCTGAACATCCGGGCATTTGTTCACAG
Seq C2 exon
ACTTATGGCCTTCACCACCGAGAAGAGCAGCGTGTGGAGATGGTGACCTTTGTCTGCCGAGTTCACGAGTCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=NA C2=0.086
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(18.4=84.2)
A:
NA
C2:
PF0059519=PDZ=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTCTGACTTTGGAGAAGGG
R:
CTGGGCAGGGCTGGACTC
Band lengths:
138-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]