MmuINT0075320 @ mm10
Intron Retention
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:129989011-129990152:-
Coord C1 exon
chr5:129990017-129990152
Coord A exon
chr5:129989688-129990016
Coord C2 exon
chr5:129989011-129989687
Length
329 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTGGGTTGTTTTGTTTTAGCAC
3' ss Score
8.11
Exon sequences
Seq C1 exon
GACCCGCCTCGCATGTTCAGTGAGGAGTACCAGAAGGCTGTTCTGGAGAATTACCATTCAGTTCTGGATCAGAAACGTAAAGAATACGTGGTCGGAGAGCTCATCTGGAATTTCGCCGACTTCATGACGAACCAGT
Seq A exon
GTGAGTGTCTGTTGGGCTTAGGGATTGTTCTCAGGTCGGCGTTTCCCCGTCCTGGGCATTTGTAAGAATCCTAGAAGTGGGTTTGGGGAGATGGCTTAGGTAGTAAAGTACTTGCTTTGGTCTAGTTTACAGTGGTTAAAAGGAGAAAAGTAGGCTTCAGATTGGGTTGTACCTCCCTCCCCCAGCTTTGGATGGGCATCTGCTTGCTCCCTCCAACACGTGGGTGCCTGCGATTGAACTTTGGGGTGAGTAGGTTTCATAGCAAGTATCTTTACTTTCTGAGCCATCTTATCAGCCCTCCTTGGTGTGTTTGGGTTGTTTTGTTTTAG
Seq C2 exon
CACCGCTGAGAGTAATCGGAAACAAGAAGGGGATCTTCACTCGCCAGAGACAGCCCAAAACTTCGGCCTTTATTTTGCGAGAGAGATACTGGAGGATTGCCAACGAAACCGGAGGTCACGGTTCAGGGCCGAGAACCCAGTGTTTCGGAAGCAGACCGTTCACGTTCTAAAGTTACAACTACCTCACTGCAGACTCAAAGGTGTCCCCAGACACTTCCTGACACTAGTGTTTCTATTTGGGATTTTGTGAACTGATACAAGGGGACTTTAGAAGTGACATCAAAGCTTTTCTTCCGTGGGGATAATAACTTACAGTGCCTTAGGCTCAGTAATATGTCCTGCTGAGAGGTGTCCAAGATAATTTGTTAGTTTTTTGGCCTTGGCTTTGTGAACTCTTGAAAGCCTGCTGTGTGAACATTCTCACTAAATTAAGAGCTACTGGTGAGAGGCTGGAGTGAAGGCTGGCTCACAATTTAAGAGCACTGACTGTTCTACTGGAGGTTCCAGATTCAATTCCTAGCACCCACCTGGTGGCTAACTATGAGCTGGTCCTCCATTTCCCAGGTGATCCAAATGCCCTTTTGGCCCCTGCGGGTACCACATGTATGTGGTATGTGGATCTACATGTGGGGAAAAAAGTCATACATGCAAAATAAAAATGAATCTAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534:ENSMUST00000026613:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.161
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(14.9=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=PD(11.2=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCATGTTCAGTGAGGAGT
R:
TGTCTGGGGACACCTTTGAGT
Band lengths:
342-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types