RnoINT0068785 @ rn6
Intron Retention
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30214141-30215581:+
Coord C1 exon
chr12:30214141-30214276
Coord A exon
chr12:30214277-30214929
Coord C2 exon
chr12:30214930-30215581
Length
653 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
TTTGTTTTTGTTTTTTTTAGCAC
3' ss Score
10.15
Exon sequences
Seq C1 exon
GATCCACCTCGCATGTTCAGTGAGGAGTACCAGACAGCTCTCCTGGAGAATTATCATTTGATCCTGGATGAGAAACGAAAAGAATATGTCATCGGAGAGCTCATCTGGAATTTTGCTGACTTCATGACGAACCAGT
Seq A exon
GTGAGTGTCTGTTAGGCTTACATTTTCAGTCCTGAGCGTTTGTGAGAATGCTAGACATGGGGTCGGGGAGATGGCTTAGGTAGGAAAGTACTTGCTTTGGTCTATTTTTACAGGGGTTAAAAAGGAGAAAAGTAGGCTTCACATTGGGTTGCCCCTCCCTCTCCCAGCTTTTTTGATGGGCGTCTCACTGTGCAACACAGGCTGACCTGTAGACCAGGCTGGTCTACAATTCATAGTAATCCGGTTGCCTCTGCCTCTGGGGTGCTAGGATTAAATGTGTGCGCGCCTCCATAGAATTTTTTTTTTTTTTTGGTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCTACCTCCATAGAATTTTAAACGTTATTACACTTTTTATTTAGTTGGGTCAGGGAGTGGAGTATGTGTGTGTGCCTGCATGTCGCAGCGTGTAGGTAAAAGTCAGACAACTTCGGGGGGTCTGCTTGCTCCCTCCACGTGGGTGCCTGAAATTGGAACTTGGGTTAATTAGGTTTCACAGCAAGCACCTTTACTCTGGGAGCCAGCTTATCAGACCCCCTTGGTTTATGTTTATGTTTTTGTTTTTGTTTTTTTTAG
Seq C2 exon
CACCACTGAGAGTAACAGGAAACAAGAAGGGGATCTTCACTCGACAGAGAAACCCCAAGATGGCAGCCTTCATTTTGCGAGAGAGATACTGGAGGATTGCCAACGAAACCAGAGGTTACGGTTCAGTGCCGAGGACCCAGTGTATGGGAAGCAGACCGTTCACATTCTAAAGCTACGACTACCTCACCGCAGACAGGGCCTGATGAAGTGAAAGGTATTCTCTCAGCAGAAGAGTTTTTCCTCTGGAGTTTGTGAACCAACACAAGGGGGACTTTAGAAGTGACATGGAAGTTTTCCTTGTGTGGGGATAATGACTTGCAGTGCCTTAGGCTCAGTAATGTGTCCTGCTGAGAAGTGTCCCAGGTCATTTCTGTCAGGTTTTTTTTGGCCTTGGCTTTGTGTACTCTTGAAAACCTACTGTGTGAATACTCACACTAAGAGCTCCTGGTTACCGGCTGAGGGACGGCTCACAATTTAAGAATACTGACTGTTCTACCAGGGGTTCCAGATTCGATTCCTAGCACCCACGTGGTCGTTAACTATGAGCTGTTGCCCCATTTCTCAGGTGATGTACGAACATACATGTGGGGGGAGGGGAATAGTCATACGTGTAAAATGAAAATAAATCTAAATAAAACTGTTTTCTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913:ENSRNOT00000001215:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(14.9=100)
A:
NA
C2:
PF0283612=Glyco_hydro_2_C=PD(11.2=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCTCGCATGTTCAGTGAG
R:
TCACTTCATCAGGCCCTGTCT
Band lengths:
344-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]