MmuINT0077960 @ mm9
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:61752908-61755217:-
Coord C1 exon
chr10:61755062-61755217
Coord A exon
chr10:61753142-61755061
Coord C2 exon
chr10:61752908-61753141
Length
1920 bp
Sequences
Splice sites
5' ss Seq
AACGTAGGT
5' ss Score
7.3
3' ss Seq
TACTCTCACCCACCTCCCAGGGA
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTTCGAGAAGATGGTGAGCGGCATGTACATGGGGGAGCTGGTCCGGCTGATCCTGGTGAAGATGGCCAAGGAAAGCCTCTTATTTGAAGGGCGCATTACTCCAGAGCTGCTCACGAGGGGCAAGTTCACCACTAGCGACGTAGCCGCCATTGAAAC
Seq A exon
GTAGGTACCATCCAGGGCCTTGGAAGGAGGGCAGGGGCCTGTTACCTCTTGAGATTTAAACCCAGGGGTCGGGGGAGGGGAGGTTTCTTCTCCTCATGTGCCAGGCCGCCTGGGCCCTTCAGGCCCTCAGCTGACCACTCCAGCTGGTCTCCCTGCCCACACTTTCTGGTACAGTCATTAAGAACAGCCCAGGGCTCTAAAGAGATGGCCTCGCACGTTCAGCCCCCAGCACGCACATGGCAGCTCACAATAATCTGTCTTTATTTCCAGGGGATGGGAACTCTCCCCTGACCGCAGGTGGTACCAGGCATATATGAGGTGCACACAAGACACCCACAGGTATAAAAAGAAAAAAGTTAAAAAGAAAAGGGTTTAGCACAAGTGCTTTATGGATAATTTTGTGTGGTTTCAAAAACAGTCCCTTCTGTCACCCTCACACACCATACATAAATACACACACACACAGCACACTACATATGCATCACACATACAAATACACACATCACACAGACACACAGACACACACACACCCTGGGTAAAAGCTGGGTCCAGGCAGCAGATGACTCCAGTGTCGAGCAAGGGTCTGACCAAACCTGAGCCTGGATTCTTAGAATTCCCCCTTAGTGTATCATGGCCTTTCCCAAACTGTGTTCTAGGAAACCTAGAGGTGTCTAGTCAACGACTGGATGGTTCTATGGGAAATACTAGTTTATAACATTCATTAATTAGAACGCTAATTAATGTGATTAACCCATCATTCCCCAAACACTGGTTCATAGATAAAGTCAGAGTTTAGGCAGCATCCTGCCCTCTGCCCTCTGGCATCCCATAGGATGCTCAGGAGCCACCATCTCGACTCTGAGAGGTGCACAGCATGGTGCAGTCTATATGAGCCCCTTGCTGCGGGTGGCTGCTGTGTCTCAGTGGGCTCTAGTCCTGCTTCTGGAGGCTTCCCACAGCCGTGGAAGGCCATCAGCAGAGACAGAAAGCCGTGAGGCTGCTCTGTGCCACCAGTCCCCACATGCGTCGACTGCCAGTGTGCCCTCTGGTCCTGGGTATTTACCTCCGGTTGGCGGAGCTTCATTCACTTCGGCTCTGACAGTCATATGCACAGCCATCTCTGTGGCTAAAGAGGCTGCTGGGTGGCTGAGGGCTTTTCCCCCCGATTTATTCTCTGCCCACACTGCGTGTTGGAGTTTGTTATCGGGTCATTCTCCTTCGGTCCCAAGATTCCGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTAACTTAACTTTACAGTCATTGGCGAAAATGAGTCAATGGCGAAAGTGAGTCAGGAAAGTGCCTGCCTTCTTCATCTTGGCCTGTTTCTGCCACTGGGTCTTTGGTTACTGAGAACTACAATGCCAAAGGGGTGTGGGACAGACAGATGGACAGACAGACAAACAGACCTGAGAAAGATTTTTAAGACTAACCATGTATAAGAACAACAGAGCCATACAGTACCTCTGAATGAAACCAACAAAAGATACGCAAGACTCATAGGCAGAAGATTAGAATTTTACAGACAACATTGGTACGTTTGTGTAAGCAACTCGGAACGCTCCATGGGGAGAGGATCCCCTCATGTTATGTTAATTAACCCCCAGGTAAAAAAACCAGCTCTTTCTCCACCTGCTCACAGGCCACGTGTGCGGTCTCCCCTTTCCAAGGCCTGGCATGAGGTACCTGGCCTGGTAGCATTTTCCACCAGCCAGATCTCTCTCCTGCAAGAACCCCACCTCAGGCATTTCACAGAGCTGCACCCACACCAGGCCGTGCCATGGGTTCTGCCTTCCCCAGCTTTGCTTCCCGATTCTGGCACTCTCCACAGCCTGCCGTGAGCTTGAACTCTTAAATTTTGATATCTTACTCTCACCCACCTCCCAG
Seq C2 exon
GGATAAGGAAGGCGTTCAAAATGCCAAGGAAATCTTGACCCGCCTGGGAGTGGAGCCGTCTCACGATGACTGCGTATCGGTCCAGCACGTATGCACGATCGTCTCCTTCCGATCAGCCAACCTGGTGGCTGCCACGCTCGGTGCCATCTTGAACCGCCTGCGGGACAATAAGGGCACGCCCAGGCTGCGGACCACAGTTGGCGTAGACGGTTCTCTCTACAAGATGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012-Hk1:NM_001146100:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(39.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(60.9=100)
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTACATGGGGGAGCTGGTC
R:
GAGAACCGTCTACGCCAACTG
Band lengths:
349-2269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: