BtaINT0072304 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012380 | HK1
Description
Bos taurus hexokinase 1 (HK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001012668]
Coordinates
chr28:25900569-25903678:+
Coord C1 exon
chr28:25900569-25900724
Coord A exon
chr28:25900725-25903444
Coord C2 exon
chr28:25903445-25903678
Length
2720 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
TTTGGCCTCTGACTTCACAGGAA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GTTTGAGAAGATGGTCAGTGGCATGTACCTGGGCGAGCTGGTCCGACTGATCCTGGTCAAGATGGCCAAGGAGGGCCTCTTATTTGAAGGGCGGATCACCCCAGAGCTGCTCACCAGAGGGAAGTTTAACACCAGTGACGTGTCGGCCATCGAAAA
Seq A exon
GTAGGTGCCTCCCCTCAAGGCTTTCTAGGGGGCATGGGGCAGAGAAGAACAACGGGTCTCTCATTACCTGCTTGAGTCCTGGTTTGCTGGGCTTCTCCTGAGGAGTGTTAGGGCTTTCTGGGCCGGTCTCCCCTCTCACTTGGCTGACCCACCCTGGGCTGCTCTCCCTGCGGGCACCTGGTGGCAGCACATTAAAAAGTTGTCGAGTTAGGGGCAAATGCTTCTTGAATGGTGTGATTACCAAAGCATCCCCTTCTCCTTCACTCTCCCCCGACCCCACATACAGCTGATCCTGGAGATGAACAGGAACTGATTGAGCTCAGGCCTGGGTTAATCCCGCCTTGGGATATCAGGGTCTTCACCAGACAGTGTTCCAGGGAACCCTACTGACCTCAAGATCATTAGATGTTCCCCGAAGAAATGGGTTTTGTGGTCACTAGGACTGGGAAATATTTAGAGAAGTATAAGTACTCATTAACATATAAAAGAAAGCCTAGTTCACTTTGGGTAACTGGTCATTTCCCACAATCCTTTTGAAACTGAAGCACCCTCTGCACTCTCCCTACCCCACTCCCCTCTCTGTCTCCCACCCTCCACCCCCCCCCCCCCGCCCCGTTCTTTCACTTGTTCACAGCCACACATGTTCCTTGGCACAAGTTTGAGAAGCACTGGTTAACAGATGAGATAGGACAGATAGACACAGAAGGACAGAGTCCAGCCAGCAACCTAGCTTCTATCTTTTGACCTCAACATAAGAACCCCAGACTTCTCTGTCTCAAGTCCACCCAAGGCCTGCAAATAACAGGCCTTGATGTAGCCTAATGTCTGAAGGGCACCTGTCCTGTGACTGGTTCCGTGTGCCACCAGGTTCTATTCTGGATTCAGGAGACTCCACATAGCCATGTGAGGCCACCTGCTTAAAGATAGGGTTAGCCTGATGCTAGAGATGCCCTTTCATGCCCACTGCCCATGGTGTGGTCCTGGAAATTCAGAGCTGGTGGCATCGTAGCTTGGCTCCAGGGAGAAGATGCTGATGTAAATGGAAAGGGGTTTATCTGAACCTACTCTTTTTGAGTCCTGGCCTTTTCTTAGGACCTCTCCTTCAGGACCTGCAGTGCTACAGTCAATAGGGAGCCACACTCCCGAGTTTCCAACAGTCTCCCTTCTCAGGTCTCCTGCTCAGCTGTTGGGAGGGGAGGGAGCAAGAGACTTGTGGCTTATCTCAGAATCATTGACAAAGTCAGGAAATGCCTGCCTTCCTCTGGGCCTGTTTACGGTGTTGGCTCTTTGGTTACCAAGAAACAAAACCCACTTGAACTAGCTCAAGAAGGCATCTATGTTGTAATAAAGCCTATCTCAAAAAAAAAAATTTATTAAGAACATCTTACCAGTGAAGATATATTGGAAGCATTCTCTTTAAATTCAGGACCAAGATAGTATCACCTGATTCTTTTTTTTGTTTGTTTCATTGGAGGATAATTGCTTTAACAATGCTGTATTGGTTTCTGCTATACAACAACATGAATCAGCCATAAGTATGCATATGTCCCCTCCCTCTTGAACCTCTCTCCCACCCCTTCCCACCCCTCTGGGTTTTCAGAGCACCTAGTTAAGTGCCCTGTGTTAGTAGCACCTGTTTCTATTTAGCATTGTCCTGGAGCCTTAGCTCCAATATTTTTTTACGAAACAAAAAAGGAAAAGAAATTAAAGGCATAAGAATTAAAAAAGAGGAAGTAAAACTGTCATTAATTGCAAATATATTTGTATGGAATACCAACATATCTAGACAAGTGATTAGAATAAAAAAGAGGTTAGGAATGATGTCTGGAGATAAGATACAAAAGTTAATTATATTTCTATGTATTGACAGTAATTAAAATATGTACATATTTTAAAATCTTTTAGACTATTTTTAGAATTACAGAAAAACTACAAAGATAGTATGTATCTCTTACCCAGTGTTTCCCGTTGTTAACATTTTAATATGGTACATTTAAAATACGTGTGTATATGTACTTTTTTTTAAGACAACATCTACAATAGTAATAAAACTATATCCTCCAGGATATACTTTAAATTCAACAAAAGCTATACAAAGCATATATGCAGCAAATTATGGACTTCCCAGGTGGCTCAGTGGTAAAGAATCCACCTGCCAAGCAGGAGAAGTGGGTTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACTCCAGTACTCTTGCCTGGGAAATCCCATGGGCAGAGAAGCCTGGCAGGCCACAGTCCATGGGGTACCAAAAGAGGTGGACATGACTTAGCGACTAAATAACAAAAATGCAGGAAATTAAACGCTGACTGGAAAAATCGTGGAAGAATGTGTAAGAATCCAGGGGCATACTACAGACCCAAAGACCAGGAGATTCCCTCACATCTCTGAAGCACTGAGCCCTGGGATGCAAGCAGCTATTTCTCCACCTGTTCCGGGCCCATGTGGTCTGCCTCTCTTCTCCTCCATGTGCCTGACATAACTTAACCATCACAGTTTTTCCTCCTGCTGCTTTCTGACTTCTTAACGGAGGAGACCCCGTCTCAGGCACTTTTCCCTTGCCACACACACATGATGAATGATCAGTTCACCTCCCCAGGACCTTCAAGCCCCAGTGCTCACAGCAGTGCACTGCCTGCTGTAGTCCTTAACTAACGAGTTTTGGCCTCTGACTTCACAG
Seq C2 exon
GAATAAGGAAGGCCTCCACAATGCCAAAGAAATCCTGACCCGCCTGGGAGTGGAGCCGTCTGATGACGACTGTGTTGCGGTTCAGCATGTGTGCACCATCGTCTCATTTCGCTCTGCCAACCTGGTGGCGGCGACCCTGGGTGCCATCTTGAGCCGCCTTCGAGATAACAAGGGCACGCCCAGGCTGCGGACCACGGTTGGTGTCGACGGGTCCCTTTACAAGACGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012380:ENSBTAT00000016432:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]