HsaINT0076363 @ hg38
Intron Retention
Gene
ENSG00000156515 | HK1
Description
hexokinase 1 [Source:HGNC Symbol;Acc:HGNC:4922]
Coordinates
chr10:69376934-69380095:+
Coord C1 exon
chr10:69376934-69377089
Coord A exon
chr10:69377090-69379861
Coord C2 exon
chr10:69379862-69380095
Length
2772 bp
Sequences
Splice sites
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
3' ss Seq
ATTGGCTTCTAACTTCACAGGAA
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTTTGAGAAGATGGTCAGTGGCATGTACTTGGGAGAGCTGGTTCGACTGATCCTAGTCAAGATGGCCAAGGAGGGCCTCTTATTTGAAGGGCGGATCACCCCGGAGCTGCTCACCCGAGGGAAGTTTAACACCAGTGATGTGTCAGCCATCGAAAA
Seq A exon
GTAGGTACCATCCCCTCAAGGCTTTCTTGGGGTGTTGGGGCAGAGAAGAGCAATTGGTCCCTTGTTACTTCTTGAGTCCAAGTTTGGTGGCTTTTCCTTCAAGAGTGTCATGGCTTTCTGGGTCCGTGTCCTCTCACTCTTAGTTGACCCATTCTGGGCCGGACTCCCTGAAGGCACTTGTGGCGGTTCATTAAAGAATGACATAGTTAGCCTCAAGTGCACAGGTGATTTTCCTGTCTAGCTACAAGAGCAGCCTCCTCTCCCACCCCCATCAGCCCATCACCCCCACCCTCCACACACACTCAGGGTAAGATTAGCGTCCAGGAAGCAGACTATTCGAGCAAGGAGCAAGGAGCTGGTAAAGCCCGGAGCCTGGGTTTTTGGAATTCCACCTCCCACTTCCAGTCTGGAGACCTCCAGACTGTGCTGAGGGCACTAAGGGCACCCTAGTAACCTCAAGATGTTAATTAGGTGCTCCCTGAAAAAAGACTTCCTTGACCAATAGGATTGGGAATATGGCACATTTATCTTCCAGTTTACAATATTATGGTAAAATAAATACAGACTCACAGTAAAAAAGAATAAGAAGTATAAAGTATAAAAATACAGATTTATAGTATCATCAACACATTAAAGAAAACCCAGTTTGCTTTGACTTGTCATTTCCCAAACTTCTTTTGTGCTTGAAACCACCCCTTCCCTGCCACACACACATTCTTTCAGAGGAAACCTGTTAACAGCCAGAAATGTGCCCTGACGTGCAAGTTTGAGAAACACCGGTTAACAGATGAGACAGGACAGTTAGAAGGAAGGACAGAGCCAGCCAGCAACTAACTGTAGCCCCTTGGCATCACACAAGAAACCCGGGATTCTCTGTCTCCTTGTGAAGATTTGCATCAGCTCTCTTTGAGGTTAGAGAAGGCAGCTGCTGGAAGAGGAAAGGGGTTTATCTGGACCAACTCTTCTGCCAAATCCATGTGCTGGAGTTTGTTGTATGATCACTCTCCTGAGTTTCCAGCTGTCCCTTTTCATGAGTCTCCTGGTCAGTGGCTGGGAAGGAAGGGGAGCGGGAGACTCGTGGATTGTCTTGAAAATCACTGGCCAAGTCAGGAAATGCATGCCTTCCTCTTGGCCTGTTTCTGGTATTGACTCTTTGGTTACCAAGAAACACAAACCCAGCTAGCTCAAGAAAGCATGTATATTATAATAAAGGCTATCTCAAAAAAAAAAAAACTATAAAAACATCCTACAAGAGCAGATGTTAGAGGCATTCTCTAAAATCAGGAGCGAGACAGTATCACCAGTTTCTATTTGGCATCGTACTGGAGTCTTAGCCAGTGGGTTTTCGTTTTTGTTTTTGTTTTTAAAGAAAAGACGAGAGATAAATTAAAGGTATGAGAATCAAAAAAGAAGTGAAACTGTCATTATTTGCAAATGGTAAAAGTCTATATGGAATACCCCCAAAATATCTACAGACAAATGAATAGAATGACGGGAGAGGTTAAAAAGATGTCTGGATGGGGTTTCACCTTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGACCCTCCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCAGCCCCCATCCTCTTCTATCATTTTTAAAATCTCTTCTCCCATCATAAAATTAATTTCTCTCATATTTTTTGGTCAGGTAGAATTGGGAAAGTCCCACACTCTCCTATTCTCGTATTACCTTAACATCCCAAGCTTCCTTTCCTTTTTTGGTCTTTATGAATATATTTATATGGACAGAATTAAGATAAACAAAATTGATTTCCCCATTCTCTCACTTCCCCATCTTGTCTTCCTAGACCCCACAGAGTTAAAACTTGGGACTCCCCCGACCCTCCCAGAACACTTGTATATTGTTTGTTTGAGGTTCGTGCCGCAGTAACAGACACAGTATTTGATTGCACATACAGATGTTTGCTGGGTATATTCACTGTACATTTTATTTAATCTGGTTTTTTGTTTGGGGGTTATTTGGGGCGAGGTTGGTTTTGTTTTTAAATATTAAAAAAAATCTGTCAAAAAAAGATGTCTGGAGATAAGATACAGAAGTCAACTGTATTTCTATCAGCAATAATAAAAATATGTACATATTTTAAAACACATTTTTAAGAATAATTTTAGATTTACAGGAAAGCTGCAAAGATAGAGTGTATGTATATGTGTTTGTGTGTATGTGTGAGTGTATATGTATGCCTGTATGTATACATATATATTTTAAAGGCACCATTTGCAGCAATAACAAAACTATAAAGTACTTCAGAATGAATCCAACAAAAGATACACAAAACACGTGTACAGAAAATTACAATTTCACTGAGAGACATCAAGGAAGGATGTATAAGCATCCAGGGGCAACTCACAGACCCCACGAGTGGGAGGTTCTCCTGAGCCTCATGAGCCCTGGGTGGTGGCAGCCATTTCGCCACCTGTTCAGAGGCCACATAGTCTTGCCTCTCCACTTCTCTTCATGGTCCTGGCTTGGCATAGTGCAACCTGGTACAGTTTTTCCTATCACTACCTGGCATTTCTTATGGAGGAGAACCCTTCCTGGGCTCTTCTCAGGCATTTGACAGTCTTCATCCCATACCATCCCATACCATCCCACACATGGTAAGTGGGGCTGTCCCTTTCCAGCACCTTTGAGCCTCAGTGCTTTGCACTGCCTCATGTGGTCCTCAGTGCATCAGTATTGGCTTCTAACTTCACAG
Seq C2 exon
GAATAAGGAAGGCCTCCACAATGCCAAAGAAATCCTGACCCGCCTGGGAGTGGAGCCGTCCGATGATGACTGTGTCTCAGTCCAGCACGTTTGCACCATTGTCTCATTTCGCTCAGCCAACTTGGTGGCTGCCACACTGGGCGCCATCTTGAACCGCCTGCGTGATAACAAGGGCACACCCAGGCTGCGGACCACGGTTGGTGTCGACGGATCTCTTTACAAGACGCACCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156515:ENST00000359426:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.063
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(21.7=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(32.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development