MmuINT0078457 @ mm9
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75500902-75501771:+
Coord C1 exon
chr2:75500902-75500982
Coord A exon
chr2:75500983-75501627
Coord C2 exon
chr2:75501628-75501771
Length
645 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTATGTGGTTTTCTTTGCAGGTG
3' ss Score
11.95
Exon sequences
Seq C1 exon
GTGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq A exon
GTGAGTCTTAAAATGTTGAACTTGGTTATTTTTAATTTCTGCATTGCTGGGAATCACAAGGCCTCAAATGCTAGGTGGTAGGACATACAACACATGTGGTAGGCGACATGTTTTGGTTTTAACAACCACATTAAAAATGTCACACCTTCTAATTCCAAAACTTTGAATAGGTGAAATACTTTTCTAACTAGTACCACAGACTAGGAAGCCTCTTTCCAAAGATGGAAGTCAAATATTAGTTAGTTGTCCTTGGCTTAGTAGAGTAGGATTTATTGTACCAGAAATAGAACTAAAATTTTCCAAAGTAAAATTGAAAACTGACTTTAAAGGAAAGAGGGCCAGGTGTGGTGGCGCGCGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTGTCTCGAAAAACAAAAGAAAGGAGGATGCTAATATTAAGATTTTTTTAACCGTCAAGATTACTTTGTGCTCTGTGACTAGATTCTAGAGTGTGAAACTAGGTCTTGCCACTTACAGTATATAATAAAAAGTTAGAATTATTTGGTCCCCCTGAACAACTTTCTATGTGGTTTTCTTTGCAG
Seq C2 exon
GTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005-Hnrnpa3:NM_053263:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=NA C2=0.456
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATGGTGGTGGAGGTG
R:
CTCCACCAAAATTTCCTCCTTCA
Band lengths:
224-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: