DreINT0078591 @ danRer10
Intron Retention
Gene
ENSDARG00000059351 | hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:ZFIN;Acc:ZDB-GENE-060224-1]
Coordinates
chr9:1693163-1693794:-
Coord C1 exon
chr9:1693747-1693794
Coord A exon
chr9:1693217-1693746
Coord C2 exon
chr9:1693163-1693216
Length
530 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
TGATGTGTCTGTGGTTGTAGGCG
3' ss Score
6.81
Exon sequences
Seq C1 exon
GTGGTTATGGAGGAGGACGAGGAGGAGGAGATGGATACAACGGCTTTG
Seq A exon
GTAAGAACAGGATTGTTATATTAACATATAATTATACTCTCTTAAAGGGACAGATCACCAATAACTGAGTATGTTTACATTGACATTAATAATCTGATTAAGACAATACTCTGATTAAGAGTCTACCATGTAAACAGCAATTTCTGATGACCTTAATCTGACTAAAGTCATAATTGAACTACACAGAAATCGAATTAAGACAGTGGAGTAAATGGAGTATTCCTATTATTATTGAAGTGCAGTGCAGACTTGTAAACACTTTAATCAAACTATTACCGTTTTGTAGGACTTTTTGCTACATTTACTGCACTTCAATAATGTCACTAAAATAAATGTACTGCACATGTCTGAATTTAATTTCTATTTAGTTTAATTATGTCTTTAATCAGATTAAGGTTATCAAAAATCACTGTTTACATTGTCTTAATCAGAGTATTGTCTTAATTGTATTAAAATTGGAGTATTGGTGTCCGTGTAAACACACCCAGCGATATTTTCTGAAGGTCAGACTGATGTGTCTGTGGTTGTAG
Seq C2 exon
GCGGCAACTATGGTGGTGGTCCTGGTGGATATGGAGGCGGCCGCGGAGGATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059351:ENSDART00000137210:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=NA C2=0.274
Domain overlap (PFAM):
C1:
PF059186=API5=FE(14.5=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]