HsaINT0076975 @ hg19
Intron Retention
Gene
ENSG00000170144 | HNRNPA3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Coordinates
chr2:178081588-178082573:+
Coord C1 exon
chr2:178081588-178081668
Coord A exon
chr2:178081669-178082432
Coord C2 exon
chr2:178082433-178082573
Length
764 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
GTTATTTGTTGTTTTTTTAGGTG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GAGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq A exon
GTAGGTGGCTTATTTTCATTGATGTTTGATATTTTAACTTTCTTTACTTATTGAAAATTATTTATTACACTTTTCTAATTTTAGTTAAAACTTCAGTGGCTAAATGGTTAAGGTGTATTTCCAAACTGTACATGGAAGAACAGGAACCCTTTTTCCCCTGGAGAGACATTAGCTGCTCTTTTTCAGCAAGTAGTAGGGGTTGAGCTAGAATTGTTCTATTAAGTCTGAGACTATATTTTTCTTAGTGAAATTTTGTAAAATGAAAACTGATTTTCTTTTTTACTATCAGAAGATGGGTTACACATTTATTTTTCATTCTTACTAGTGCAGATACTTGATACTCTATTATTATTAGGTATTACCAGGCTTCAGAGTGCTAAATCAATTCATTGGCTTATTTGCCAGTGGCTTAAATGTAATATAAAACCAGAGTTGAGTAATTCTAGCTATTCAGGAGGCTGAGGCAGAGGGGTTGCTTGAGGTGAGGATTTTGAGACTAGTCTGAGCAACATAAGGAGACCGTATATCTAGAAAAATAAAATAGGGGAACATGGTGGCACATGCCCATAGTCTAGCTACTCAGGAGACTGAGGTGGGAGAATGGCTTGAGCCCAGGAGTTCAAGGCTGCATTGCTGTGGTTGCACCACTGTACTTGAGCCCGGGCAACAGAGCAAGACCCAGTCTCTTACACACACACCAGAATTGAATAACGTGACTATACACTTAAGTTTTTGTGTGGTCTTGTTATTTGTTGTTTTTTTAG
Seq C2 exon
GTGGCAACTATGGCGGTGGTCCTGGTTATAGTAGTAGAGGGGGCTATGGTGGTGGTGGACCAGGATATGGAAACCAAGGTGGTGGATATGGTGGAGGTGGAGGATATGATGGTTACAATGAAGGAGGAAATTTTGGCGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170144-HNRNPA3:NM_194247:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.446
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTATGGTGGTGGAGGT
R:
CACCGCCAAAATTTCCTCCTT
Band lengths:
222-986
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)