MmuINT1020756 @ mm10
Intron Retention
Gene
ENSMUSG00000059005 | Hnrnpa3
Description
heterogeneous nuclear ribonucleoprotein A3 [Source:MGI Symbol;Acc:MGI:1917171]
Coordinates
chr2:75662845-75663714:+
Coord C1 exon
chr2:75662845-75662925
Coord A exon
chr2:75662926-75663570
Coord C2 exon
chr2:75663571-75663714
Length
645 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTATGTGGTTTTCTTTGCAGGTG
3' ss Score
11.95
Exon sequences
Seq C1 exon
GTGGCTATGGTGGTGGAGGTGGTGGCAGCAGAGGTAGTTATGGAGGTGGTGATGGTGGATATAATGGATTTGGAGGTGATG
Seq A exon
GTGAGTCTTAAAATGTTGAACTTGGTTATTTTTAATTTCTGCATTGCTGGGAATCACAAGGCCTCAAATGCTAGGTGGTAGGACATACAACACATGTGGTAGGCGACATGTTTTGGTTTTAACAACCACATTAAAAATGTCACACCTTCTAATTCCAAAACTTTGAATAGGTGAAATACTTTTCTAACTAGTACCACAGACTAGGAAGCCTCTTTCCAAAGATGGAAGTCAAATATTAGTTAGTTGTCCTTGGCTTAGTAGAGTAGGATTTATTGTACCAGAAATAGAACTAAAATTTTCCAAAGTAAAATTGAAAACTGACTTTAAAGGAAAGAGGGCCAGGTGTGGTGGCGCGCGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACTGTCTCGAAAAACAAAAGAAAGGAGGATGCTAATATTAAGATTTTTTTAACCGTCAAGATTACTTTGTGCTCTGTGACTAGATTCTAGAGTGTGAAACTAGGTCTTGCCACTTACAGTATATAATAAAAAGTTAGAATTATTTGGTCCCCCTGAACAACTTTCTATGTGGTTTTCTTTGCAG
Seq C2 exon
GTGGCAACTATGGTGGTGGTCCTGGTTACAGCAGTAGAGGAGGTTATGGAGGTGGTGGACCAGGATATGGAAACCAGGGTGGTGGATATGGTGGTGGAGGAGGAGGCTATGATGGTTACAATGAAGGAGGAAATTTTGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059005:ENSMUST00000111962:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.464
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATGGTGGTGGAGGTG
R:
CTCCACCAAAATTTCCTCCTTCA
Band lengths:
224-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types