MmuINT0084115 @ mm9
Intron Retention
Gene
ENSMUSG00000000157 | Itgb2l
Description
integrin beta 2-like [Source:MGI Symbol;Acc:MGI:1277979]
Coordinates
chr16:96656192-96657397:-
Coord C1 exon
chr16:96657227-96657397
Coord A exon
chr16:96656350-96657226
Coord C2 exon
chr16:96656192-96656349
Length
877 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
3' ss Seq
GCCTCATCTGCCCCCCTCAGGCT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GTCAAGCGGCAACATTCAAAGTGGACTTCCAGCGGACCCAGGACAACTCTGTTGACCTGTACTTCCTGATGGGCCTCTCTGGCTCTGCGCAAGGCCACCTCTCCAATGTCCAGACACTGGGCAGTGACCTGCTCAAAGCCCTCAATGAGATCTCCAGGTCAGGCCGAATCG
Seq A exon
GTGAGGCCCACAGCCACTGTAGGCTTCTGGCTCAGCTCTTCCCCATACCCTGGGCAACCCCTGCCCCCACACATCAGAGGCAGAGATCTGACGGTCCTTAGGCCATCTGGAATGTGAGTGGTACTGAGCCTGACTCCCCTCCAGAGGCCATGTCCAGTCACTTGACCCCAAAATTCTGCTCTTCACTTCTTCTTTCCTCTTTCATTCATATTCTGGTGTGCTCAAAAAACAGAAGTGCTAATTTCTAAAAAATTAATGAGCTTCAAAGCATGTTGATTAATTAGCAATTACAGCATAAAGGTTGTAATCAAAGTGAGCAAAAGTCACAGGTCAAAGGGTCAGCACTCCACAAGCACCAACAGGCTCATAGAACATAGGCTTACATACATGCATGTGTGGTATGTGCACATAAAGGCTTGTGTACATACATGTGTGGTATGTGTGTGCACATAGATTCCCCAGAATACCACTATCTCTTTTCTGAATAGTGATGCACTCCCTCATAAGTGTGTGCCCATTTATATACTTGTATGTGTATGCATAGCCAATACACACCCACAGGCATGCTCACACACATATGTGCACATGTGCACATACATTCTCTGATACATATCTGGTGACACACATGAACCAAGTATATGCATACCTAGACATGATCATATACATACAGGTACACACATGTGTGTACTGTGCCCACACATATATCACACATTTGAATGTTCACAAGTGCTCACACAGACAAATACCTACAGGTACCACACCAAACTCTCCTTGGTTTTACTACAAGACAAGTATCTCCCAGGCTCACCTCCCTATCTTGGGCCCAGCCTTCTACTTCCCACAACCCTGCCCCTCCAGCCTCATCTGCCCCCCTCAG
Seq C2 exon
GCTTTGGATCCATTGTGAACATGACCTTCCAGCACATCCTGAAGCTGACTGCGGACTCCAGCCAATTTCAGAGGGAGCTGAGGAAGCAACTGGTTTCTGGAAAGCTGGCTACCCCCAAGGGACAGCTGGATGCTGTGGTTCAAGTTGCCATATGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000157-Itgb2l:NM_008405:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(39.6=100)
A:
NA
C2:
PF0036213=Integrin_beta=PD(5.6=15.1),PF0036213=Integrin_beta=PU(18.6=86.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGCGGCAACATTCAAAGT
R:
GCATATGGCAACTTGAACCACA
Band lengths:
326-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: