MmuINT0084142 @ mm9
Intron Retention
Gene
ENSMUSG00000020758 | Itgb4
Description
integrin beta 4 [Source:MGI Symbol;Acc:MGI:96613]
Coordinates
chr11:115866845-115867369:+
Coord C1 exon
chr11:115866845-115867081
Coord A exon
chr11:115867082-115867210
Coord C2 exon
chr11:115867211-115867369
Length
129 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTGTCTTGTCCTGCCCTAGGCC
3' ss Score
10.37
Exon sequences
Seq C1 exon
AGCACCTGGTGAATGGCCGGATGGACTTTGCCTATCCAGGCAGCGCCAACTCCCTGCACAGAATGACTGCAGCCAATGTGGCCTATGGCACGCATCTGAGCCCACACCTGTCCCACCGAGTGCTGAGCACGTCCTCCACCCTTACCCGGGACTACCACTCTCTGACACGCACAGAGCACTCCCACTCAGGCACACTTCCCAGGGACTACTCCACCCTCACTTCCCTTTCCTCCCAAG
Seq A exon
GTGAGTGACCCCTGCCTGGCCCGTTGACCTTCCTACACTTTAATCCCTAGACAGCCACCAGCCAGTTACCCATACCTGTCTCACATACACACACACACACATTCTCATTCTTGTCTTGTCCTGCCCTAG
Seq C2 exon
GCCTCCCTCCTATCTGGGAAGATGGGAGGAGCAGGCTTCCGCTGTCCTGGACTCTTGGGTCCTTGAGCCGGGCTCACATGAAGGGTGTGCCCGCATCCAGGGGTTCACCAGACTCTATAATCCTGGCCGGGCAGTCAGCAGCACCCTCCTGGGGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020758-Itgb4:NM_001005608:33
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=NA C2=0.259
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGGATGGACTTTGCCTATC
R:
GCTCCTCCCATCTTCCCAGAT
Band lengths:
254-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: