MmuINT0084469 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108468684-108469444:+
Coord C1 exon
chr6:108468684-108468823
Coord A exon
chr6:108468824-108469278
Coord C2 exon
chr6:108469279-108469444
Length
455 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GCACCATCTCTCATCTCCAGGAG
3' ss Score
9.35
Exon sequences
Seq C1 exon
AGCTGCTCCCTGCCGAAGAAACGGAACAGGATAAGGAACACACGTGTGAGACCCTGCTCATGTGCATCGTCACTGTTCTGAGTCACGGGCTGCGGAGTGGGGGAGGGGTAGGAGACGTGCTCAGGAAGCCATCCAAAGAG
Seq A exon
GTAAACGGATCACAAGGGAAAAAGAGGGGGCACAGGGGCTTGTGGGGACAGGCAGCGGGGGCGCTCGGTGGTGATGCTGAGTGTAAACTGTCAGGTCTGGAACATGAGCTGGGAGTATGACAAGCCATTGTGCAGAACCCAGCCAGAGCCCCTTCCCACAAGACCCCACTAAGGCATGTTGAGGCCCCAGGGCAACTCCTTAGACAGAGGTTTGTTTAATATTAGGTCTGGCCAACATACTGACAGAATCTTCCTAGTTGTGTTCCCCACAGCTGTTGAAGCACTCCCAGTATAGAGTCAGGGATTAAAAGGAGACTTGGTTGGGAGTTTTAAAGTTTGATGCTCAGTGTAAGTCCCGTCAAAGTGGACATCTGTCCAGCTGGAGCTGGACTCTGACCTCTGAAGAGTAAAGGGCAGTGTGGGCCCCGCCTGAGAGCACCATCTCTCATCTCCAG
Seq C2 exon
GAGCCTCTGTTTGCTGCAAGGGTGATCTACGACCTCCTCTTCTTCTTCATGGTCATCATCATCGTCCTGAACCTGATTTTCGGGGTCATCATTGACACCTTTGCTGACCTGAGGAGTGAGAAGCAAAAGAAGGAGGAGATCTTAAAAACCACGTGCTTCATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:58
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCCCTGCCGAAGAAAC
R:
GCAGATGAAGCACGTGGTTTT
Band lengths:
303-758
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: