BtaINT0078490 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21648120-21649023:-
Coord C1 exon
chr22:21648884-21649023
Coord A exon
chr22:21648286-21648883
Coord C2 exon
chr22:21648120-21648285
Length
598 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
CCCCCACTCCTCTTTTCCAGGAG
3' ss Score
11.14
Exon sequences
Seq C1 exon
AGCTGGTCCCTGCAGAAGAGACAGAGCAAGATAAAGAGCACACGTGCGAGACGCTGCTGATGTGCATCGTCACGGTGCTGAGTCACGGGCTGCGGAGCGGGGGCGGAGTGGGCGATGTGCTCAGGAAGCCATCCAAAGAG
Seq A exon
GTAGCTGCGCCCCAGGGGAAGGAAGAGCGGGGGGCGGGGTGGCGGGGAGAGCGCAGCGCAGTGGGCTCCAGCGTAAACTGCAGACGCGGGGGCAGCGCCAGCGCCGAGAGCGGTGACGGGTAGACGCGCAGAGCCAGCTGCTTAGGGCTCCTTTTCACTCTGGTTCTCATCAAAATGTGATGCTGGGCGGAAGCCCCCCCCCCGCTCCCCGCGCTGTGGAAAGGGGCAGCTTCCGCCCTCCCCTCCGTCTGCTAAAATGATTCTTTTCTTCAGGCCTGTCTGGCCTTCCTGAACACATTTGCAAACCCTTTAGATCCCAGGAAGTGGGCAGGTGCCACGTGACACTTGGAGAACTCACGATATACCCAGGGGGTGTGAAAAGAGATGAGGTTGTGGCTTTTACAGCTTGATGCCCAATGTGCTGCTGGGGGTGGGGGGAGCCAGGGGGCTTGGGACATCTGATTCGGGTGCATTCAGTCCCACTCCTCTGCCCTGAGGTCTGCAGACCCAGGGGTTGGGTAGGGGGGTACCTGCTGACAGGTTACACCACCTGCACCCCCACCATCCCTACCCCCCCACCCCCACTCCTCTTTTCCAG
Seq C2 exon
GAGCCCCTCTTTGCTGCTCGAGTGATCTATGACCTCTTGTTCTTCTTCATGGTCATCATCATTGTCCTTAATCTGATTTTTGGGGTCATCATTGACACCTTTGCCGACCTGAGGAGTGAAAAACAGAAAAAAGAGGAGATATTAAAGACCACGTGCTTTATCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.9=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.3=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCTGCAGAAGAGACAGA
R:
CGCAGATAAAGCACGTGGTCT
Band lengths:
302-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]