DreINT0083673 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35545252-35547930:-
Coord C1 exon
chr11:35547785-35547930
Coord A exon
chr11:35545418-35547784
Coord C2 exon
chr11:35545252-35545417
Length
2367 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTA
5' ss Score
0.8
3' ss Seq
TATCGTCTCTTCCTCCGCAGGAG
3' ss Score
12.06
Exon sequences
Seq C1 exon
CTGTAGGAGTTCAGTCGTCTGCATTGGTGATTGAGGATAAAGAGAGGACCTGCGACTCTCTGCTTATGTGTATCGTCACTGTGTTGAGCCACGGCCTGCGAAGCGGTGGAGGAGTCGGAGATGTGCTGCGAAAACCCTCCAAAGAG
Seq A exon
GTGCTAAACAAACACAGCACCATCAACTTTTTGCTTAGACTATATTCAGCCTAGTTCAGGTCACTATTTTTTCCACCTAATAGTGCAAAACTATACACTACCTGACAAAAGTCTTGTCGCCGATCCCAGTTGTAAGAGCAACAGATAATAAATTGACTTCTAGTTGATCATTTGGAAAAGTGGCAGAAGGTAGATTTTACAGATTTTATCTGTTGAACTGCATCCCAATCATCACAAGACCTATTGTAACCCGCATGGACCCAAGATTCTCACAGAAATCAATTAAGTTTGCTGAAGGAAAAATCATGGTTTAGGGTTACATTCAGTATTGGGGCGTGCGAGAGATCTACAGAGTGGATGGCAACATCAACGGCCTGAAGCATCAAGACGTTTTGCTGCCCATTACTTTACAAACCACTGGAGAAGGCAAATTCTTCAGCAGGAGAGCGCTCCTCGTTATACTTTAGCCTTCACATCAAAGTTCCTGAAAGCAAAGAAGGTCATTGTGATCCAGGATTGCTCAGCCCAGTCACCAGACATGAGCATTATTGAGCATGTCTGGGGTAAGATGGAGGAGGCGGCATTAAAGATGAATCTAAAGAATCTTGGTGAACTCTGGGAGTCCTACAAAAAAACTTTCTTTGCCATTCCAGATGACTTTATTAATAAGTTATTTGAGTAATTGCAGAGCTGTATGAATGCAGTGCTCTAAGCTCATGGGAGTCATACACAATATTATCTATTTTTTCTACTGCCCCATGACTTTATATTCTATACTGTAGACTTTCAAGTCAGACCTTACTGTCCTAATTAAAGAATTAAAAATCAAGGCATGATCAGATTTATTATTGGTAAAATGAGCGTAATCTAGAGGCCTTTGCCTTTCATATAAGCCATTTCTGGTACCAAATGATCAACTACATGTCATGTTATTATTTGTTGTTCCTAAAAATAGGCGACAAGACTTTTGTCAGGTAGTGTATTTCTTGCTTAGAGGTTTTGTCTTGTTTCTAGTCCGGATATCTACGTAGAAGCATTTGCTAGACATGTAAAAATGTAACTTGTTTTCAAAAAAACAAAAAAAAATTAACCCTTTTATTTTAAAGGCTTGTTTTTAGAAAAAAAGTTTAAATTAAGTAAGCTTTCATTAAAACTAGTTAAATGATCTCCCAGTTTCGTTGTTTTAGGGTGAAACTTGCTTAATTTTGATGTTTTTTTAAAAACAAACTATTTTTTTTCTTCTATAAAAAAAGCTTCTTGATTTAGAAATTATGAGATTGTCTTGACCAGAAACAGGACAAAATGTAAGAAAACACATTTTGCCGTGTAATTATTTTTAAAAATGTAAGTAAAATAATAGTTTGAAATGGAGTCAAACCAAATAATTTATTTAAAATTAATATTTAATTATTAAAAAGTAAGGTACATTTAACTTTAAGAAGTAAAAAAATATTTTTGACAATAATACTGTTTTTAAAAGGAAAGCATTTATTAGTCTACTCATTTGTGATTTTCTGAAAGGAATACTTATCATAAAATGTAAATAAAATAAACAGTGATTGAGTTGTAGTCAAACAAATAAACAAACAAACAAACAAACAATCTGGTTAAAATGTAATATTTTAGATGTATCTTTACATTTATTTTGCTTTTAATTTGCTAAACTCTTTTCAATTCCATTATTAAAATAGTAAGAAAAGTATTCTTATTATTATTAGTAGTAGTAGTAGTAGTAGTAGTTGTTGTAGTAGTAATAACAATACTTATAGTAATACTACTACTACTAATAATAAGAATACTGTATAAGTAGTCTATACACTAAAGAAATGAGTTAAGTGGTTACAAACCTTTAATATGGGCTACATTTAAACAAATTAAGGAACTTCAGTGATGTCAACATAATTTGTTTGTTTAAATTCAGCCCATATCAATTGCTTGCAACCACCTTACCTCATTTATTTTATTATTATTGTTTTTATTATCATTAGTGTTATAATTTTTTTCTCTGTTAGATAAATGTAATTTACGCTTGTTTAGAGGTTAGGGGTGGGAATAATATTTGTTTACATTTCTCTGTAAAATTACTTTGTTATATTTGTAAAAGTTTAATAAACAAACATTAAAAAAAACAATACTAAATCCAATGAAGCATTTATTGCTAGTGTACTAACACATGCATGGTTTACCATAGTTACAGAACGACAAAAGCTTTTTTTAAGGGGCATTTGACAATTGTTTTGTCATTTGAATAAGACTGAAGCTTTATGTGGTCTGAATGCAGTCAGTCAGTAATACTGAAAGTGAAATGCTCTGTCTGATTGATTGAGTTAGAAACAGTGCTGATCTTTATCGTCTCTTCCTCCGCAG
Seq C2 exon
GAGCCTCTGTTTGCGGCTCGCGTCATCTACGATCTGCTCTTCTTCTTCATGGTCATCATCATCGTCCTCAACCTCATCTTTGGGGTCATTATCGATACCTTCGCAGACCTCAGAAGCGAAAAGCAGAAGAAAGAGGAGGTTCTGAAAACCACCTGCTTTATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(19.0=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(11.5=51.8),PF041569=IncA=PU(28.2=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]