MmuINT0084471 @ mm9
Intron Retention
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108299592-108302145:+
Coord C1 exon
chr6:108299592-108299678
Coord A exon
chr6:108299679-108301986
Coord C2 exon
chr6:108301987-108302145
Length
2308 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTCTCTTGATGGATTTTTAGCTC
3' ss Score
4.81
Exon sequences
Seq C1 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGTTGGGGACCGTCATCCAATATGGCAACGTGATCCAG
Seq A exon
GTAGGCGCAGCTGCTCTTGTCTTCTGGAGCTGACACATGAGAAAGAAAAAGAACTGAGCAAGCAAACTCGTGATAGGGGCAATGGCAGCTACTTTATTGAAAACAACCAAAACAACAAAACACAACCTCCTTGTGTTTCTTATTATATCACTTGGTCATGCTATTGGGTCACGCATAGTGTAAGCATTTTCTTTCTCAGCCTGTTGCTCATCACTTTCATGCAGATGGTTCAGATGGGAAACTTGATGACTGAAGAGGATAGATACTACTTGTTACGGTTTTGCATCACTGACAGTCTTAGGGAGTTCTTAGGTTTGGTGAAAGTTGACTACATTTTAGCTTTTGTTTAGGAGCTGTTTGCCGGTGAAAATAAAACCAGTTATGTGCACACACAGACATATGTATGTATGTATGCATGCACATATGCATGGCATGTATGTATGTATGTATTTATTTATGTGTGTACAAGGCTTCACTGAGCCCAAACTGGCCTTGTGCTCACCATGTGGCTGAGCTGACTCTCAACTTTTGATTATTTTGCCTCTACTCTATAAACACTGGGGTTATGGGCTTGTAAAGGCCCAGGTACCTTCACAAAATTTTAATCATATATATTCTTTTAAATAAGTTTTTATTAATCAAAAGTATTTCAGAACTGTCATATTGTAGAGTTGTTTGCTTCACCTGTTATCTTCTGTATCCTTGAACCTGCGGCAGAGATAACACCATCCAAACAAGGCTTCCACAGGTCTTTCCCAGAAGGTGCTGCTAATCTTGTAAACTACTAATTAGGAATGAATTTCTTCCTGTTTTTATTGCTATTGGGATTAGAAGAGTGCTAACCATTAGTATGGAAAAAAAAACTACTAAAAGTGGGTAAAAATAACTTTCTGTGAATTTTTTTTTTAAGTAGGGGATGTGTAAAAGTTAACTAGATAGAGTCTTGCTAAGTTGTCTAGGCTTGCCTTGATCTTACTGTATAGCCCAGGCTTGCCTTGATCTTACTGTATAGCTCAGGCTAGCATTGGGTCTTCTTCCTGCTTTGTCCTCCTGAGTGATAAGATTGTAGGTATGCGGGCCACCATTCCTGGCTAATGCTTTTTGATTAAATGTTTACTTAGGTTAGGTCTTATTCATAGCTATCAAAAGCTATTAGAACATTAGATAATCAACCCATGTGCCCTTGTGAAGTTCCATCCTGTTGTCAAGCGAGGCCAGTCCTTTGAGGCTGAGTAGGAGATACTCAGTTGGTTAGATTGCAGAACTGGCTGCAACTGAGGATTTAAAAAGTACATGAAGGGTACTGGCAGCCAATACATTCCAGTCCTGTGAGGTTTCAAGGAAGACATGCCAAACCAGTTGACGAGGTATCTGCTTTTAGAATGGGTTTAAGAGATCTCAGTTTTATTTCTGGTCTCAGGCTTTGGAACTCACCTGTGGGAAGGTGAGTCAGTGGATGATCAGAGGCTGTTCCTGGAGGAGCATCAAGGGCCTGGGAGGACATTATTGTCTCAACTTATCTTACCCACAGGCCATCAAGAATTCACAAATGGTACAGGTTATTCCTCTACTCTCAGCAGCCCTATCAAGATTCGTTGGCCTTTTAAGGCTGCTGCTCTTGTGTTATCATGTGAACAAGAGATGGGGCAGCAGCAATGAAGTCACAAGCTGGCCTTCCCCCTCTAGGGACTGAGAAGTCATGAGTTTGTGTTTCTCTTTGATCCATAAACATGGGAAGCCATGGTAATGCTTACTGGTCCAGATTACTAGATAAACTCTTTTTCATCTGCATCTTCCCTCCTTTATGTTTCATGTAATCAACATCTTTGAGTGAAGGATGCAGCAGTCAGTGAAGGTGGATGCTCAGGGCGTCCTTCACAGAGAATGATGGAACTGCCTTTTAAATCAGACTAGTGCATAGTGACAAAACGCCCTTCCTTCATTCCCCTCTGGAATCGGTGCCTAGCTAGACTACAGTCCCTTAGCCCCTATCCACAGTATGATGCCATGCCTCTCTAGCAGCCTCAGATGATGGAATAATTGGCTTCCACAGTGTCTCTCTTGCCCAAGGCCATGTTGATGGAAAAAAAAAAAAGGCAAACAATTTTTCCTTCTCCCTGGCCCTCTTCTCTGCCTCTGTTCGCTGTTCCTTTGCTTGTTGTTTCCAGGTTGGGCACTTTATGTTTCTTCTGCTTCTCAGCAGCTTAGTGGTGGGAGGAATGTCTGTTACAAAATTTACTTGACAAAGAGAGCTATGGCAGAGAGTTCACAGGCCCGCTCATATCTCATTCTCTTGATGGATTTTTAG
Seq C2 exon
CTCCTGCATTTGAAAAGCAATAAATACCTGACTGTGAATAAGAGGCTCCCAGCCTTGCTAGAGAAGAACGCCATGAGGGTGACGTTGGACGAGGCTGGAAATGAAGGGTCCTGGTTTTACATTCAACCATTCTACAAGCTTCGCTCCATCGGAGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-Itpr1:NM_010585:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: