RnoINT0076679 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140372957-140375398:+
Coord C1 exon
chr4:140372957-140373043
Coord A exon
chr4:140373044-140375239
Coord C2 exon
chr4:140375240-140375398
Length
2196 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TTCTCTTGTTGGATTTTTAGCTC
3' ss Score
6.67
Exon sequences
Seq C1 exon
CATGCTGCAGACTTGGAAAAGAAGCAGAATGAGACAGAAAACAGGAAATTGCTGGGGACGGTCATCCAGTATGGCAACGTGATCCAG
Seq A exon
GTAGGCACAGCTGCACTTTTCTTCTGGAGCTGACACATGAGAAAGAAAGAAAAAAAACTGAGCAAGCAAATGCGTGATACAGGCTCCATTCGTTTGGCAATAGCAGCTTCTTTACAACCAAACAACAAAGCACAGCCTCCTTGTGTTTCTCAGAATATCCCTTGCTCATGCTATTGGGTCATGCGTGGTGTAGGCATTTTCTTCCTCAGCCTGCTGATCACCTGTATGCAGATGGTTTAGATGGGAAGCTTGATGGCTGAAGAGGACACTACTTGTTATGGTTTTGCCCCACTTACAATGTTAGGGAGTTCTCGTGTTTGGTGAAAATTGAATGCTCTGTACGTTTTAGCTTTTGTTTAAGGAGCTGCTTACCAGGGAAAATAAAAACAGTTGTGTGTACACACAGACATATGTATGTATGCACGTACATATGTATATATGTGCAAGGTTTCATGCAGCTCAAACTGGTCTTATGCTCACCATGTGGCTGAGTTGACTCTCAATTCTTGATTGTTTTTCCTCTACTCTACAAGCATTGGTGTTATGGGCATGTAAAGACCCAGGCACCTTCACAAAACTGTAATGATATATATCCTTTTAAATAATTTTTTATTAATCAGAAGTATGTCACAGCTGTCATATTTTAGAGTCATTTGCTTCACCTGTCATCTTCTGTACCTTTGAACTTGCTGTGGAGACAACACAGTCCAAACAAGGCTTCCACAAGTCTTTCCCAGAAGGTGCTGCTAACCTTGTAAACTTCTAATTAGGAATGAATTTCTTCCTGTTTTTACTGCTATTGTGTGTAAAACAGTGCTAACCATAAATATGGGGAAACAACTACTAAAAATGGGTAAAGATATCCTTTTGTGATTTTTTTTTTTAAATAGGGCATTTAAAAGTTGACTAGAGTCTTGCTAAGTTGCCCAGGCTTGCCTTGATCTTTCTGTATGGCCCAGGCTAGCATTGGGTCCTCTTCCTGCCTTGGCCTCCTGAGTGCTAAGATTGTAGGTATGGGGGCCATCATTCCTGGCTAATGATATTTTATTAATTTCTTACTTAGGCTTGGCCTTATTTATAGCACTTAAAAGTTACTGCAAGATTAGCTTATCAATCCCATGTGCCCCTTTGAAGTTCTATCCCGTTATCAAGCAAGGCCAGTACTCTGAGGCTCCGAGTAGGAGATACTCAGTTACACTGGAGAACTGGCTGCAACTGAGGATTAAAGAAGTACGTAGTGGGTACTGGCAGCCAATACATTCCAGTCCTGTGAGGTTTCAAGAAAGACATGCCAAACCAGTGAATGAACCATCTGCTTTCAGGATGGGTTTAAGTAATCTCATTTTTAGTTCTGGTCTCAGGTTTTGGAACTCACCTGTGGGAAGGTGAGCCATTAAATACCGGAGGTCAATCACTGAGGGAGCAGCAAGGGCCTGGGAAGACACTATTGTCTCCTGTTCATCTTGGTCATAGGCCATCCAGAATTCACAAATTATACAGTTATTCCTTCACTCTCAGCAGCCGTGTCAGTAGATCTGTGGGCCTCGTAAAGGTGCTCTTATGAACAGGAGATGTGGCGACAGCAATGGAGTCACAACCTGGCCTTCCCCCTCTAGGGTCTGAGAAGTCTTGAGTTTGTGTTTCTCTTTTCCCACCAACGTGGGAAACCTTGATAGTGCTCACTGGTCCAGTTTATTAGACAAACTCTTTCCCATCTGGATCGTTCCTCCTTCATGATTCATGAAATCAGCATCCTAAAGCGAAGATTGGAGTGCTTAGAGTAGTCAGTGAAGGTGGATGCTCGGGTGTCCTTCACAGGGAATGGCAGTCCCCTGACGGAACTGCCTTTTAAATCAGACTCACACACAGTGACAAAACTCCATTCCCCACTGGTATCAGTGCCTTCGTAGACTACAGTCCCTGAGCCACTGTCCACAGGGTGATGCCACGTCTCTCTAGCAGCTCAGATGATAGAATTGTTGGCTTCTGTAGTATCTCTCTTGAAAAAGACAATCTTTCCTTCTCCCCGGCCCTCTTCTCTGCCTCCATTCACTGTTCCTTTCCTTGTTGTTTCCAGTACTGGGCATGTTGTGTTTCTCCTGCTTCTCAGGCTGTTACAGTATTTACTTGACGAAGAGAGCTAGGGCAAAGAATTCACAGGCCGGCTCATATCTCATTCTCTTGTTGGATTTTTAG
Seq C2 exon
CTCCTACATTTGAAAAGCAATAAATACTTAACTGTGAATAAGAGGCTTCCTGCCCTGCTGGAGAAGAACGCCATGAGAGTGACGTTGGATGAGGCTGGAAATGAAGGGTCTTGGTTTTACATTCAGCCGTTCTACAAGCTCCGCTCCATCGGAGACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(13.9=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(25.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]