GgaINT0021943 @ galGal4
Intron Retention
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18426856-18428053:+
Coord C1 exon
chr12:18426856-18426942
Coord A exon
chr12:18426943-18427894
Coord C2 exon
chr12:18427895-18428053
Length
952 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AACTCTAATTCTTATTCTAGCTG
3' ss Score
6.32
Exon sequences
Seq C1 exon
CATGCAGCCGATTTGGAAAAGAAGCAGAATGAAACTGAAAACAGAAAGCTGCTGGGAACAGTTATCCAGTATGGCAATGTGATCCAG
Seq A exon
GTAAGGTGTGAGCATCTCTTCAAGCCGAATGGGGGACTTCAAGCAAAATCCTGTACAGTGTGACTGCAAATTTATGAAATTCATTGAGAAGAATCTGTAGTTTTGAGTAGTGCAGCAGCACTGCCAAGTGTGATCCCAGGAAGCAAGGTCTGATCTCCATAAAGGTGCAGCTAGACCAATTCTTTTGTGATGGGTTAGCTGTGCTTTTTCTCCTCCAAGGTCATGTAATGATTTCTTTGGGAATGTTTTCTATGCTGCCTTACCGCTGGCTGTATGGAAATGACACAGGCACTGTGCAGTTCCAAACACAATTTCTTGCAGTCAGGTGTTCAGACATCAGATGGTAATCTGTAACAAAGGAGAGTGAACCCATATAAGCAGTGACAGTCCATTTAAGCAAAGGATATACCATGTACTGGGGACTGAAAAATATTGAAATCATGCATCAAACCCAAGAAAAATGGCAAGTACAGTAACTACATAACTGAGAAAGGCACACCTTAATAATTGGAGTATAATGTGAGCAGATGCTGGATCACCCTGAAACCAAAGCAGACTTACCTTCCAGTAGGTATGGTGCTGCAGCCCTTTCAAAGTAGGGATAATTACTGTCTAGTTCTCATTTGCCCTAATTCAAGGCAGTGGGTGACAAGGAGCATGTCAGAGCAGGCTTTCTTGTTGCATGAAGTTGGCTGACTGTCCTTTGCCATTTGGCATGTCCTAAAGTAATTGCAGTTAGGTTAGCTGGAAGGGCTTTGTGCAGGAGCACAGTGTGCCTACTGAAATAAGTGCCGGCAAAATCGTGCCTGAATTCATCATGCTTTTCCTGTAACATGATTTAGGTTTTATTTTGCTTCCTGTGTAATGCTGTGGTTGTCCTATACGTGCTCACTGTCTGTTGAGGGGAGGAAAAACGAGCATTCCTAGAACTGAACTCTAATTCTTATTCTAG
Seq C2 exon
CTGCTTCACTTAAAAAGTAACAAATACTTAACAGTAAATAAGAGACTGCCAGCTCTACTAGAGAAGAATGCCATGAGGGTGACCTTGGATGAAGCTGGAAATGAAGGCTCCTGGTTCTACATACAGCCATTCTACAAACTGCGCTCCATTGGAGACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294:ENSGALT00000013506:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(12.4=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGATTTGGAAAAGAAGC
R:
CTCCAATGGAGCGCAGTTTGT
Band lengths:
238-1190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]