MmuINT0088296 @ mm10
Intron Retention
Gene
ENSMUSG00000030149 | Klrk1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:MGI Symbol;Acc:MGI:1196250]
Coordinates
chr6:129617483-129621242:-
Coord C1 exon
chr6:129621135-129621242
Coord A exon
chr6:129617522-129621134
Coord C2 exon
chr6:129617483-129617521
Length
3613 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGT
5' ss Score
9.89
3' ss Seq
CTGTGCTCTTTATCCACTAGGTA
3' ss Score
10.57
Exon sequences
Seq C1 exon
AGATGAGCAAATGCCATAATTACGACCTCAAGCCAGCAAAGTGGGATACTTCTCAAGAACAACAGAAACAAAGATTAGCACTAACTACCAGTCAACCTGGAGAAAATG
Seq A exon
GTACGTCTTGGTTTACATTTGTCTCCTCAAAATGGACTGAGGTGGATGTGGAAACATTGCTGTTGTCATTCACAACCCTTTTTCTTTTTACTTCCCCAGGGGAACAAGCTCTTTTTGCTATAGAATGTATATGCAAGTTACAGGTGATGAGACAATTTGTTATAAGGACAACTGAACCAAGAATTTTGGGAATCTGCTTTTAAGGAAGGCTATATGGTAGACTATAGAAAATAAATTTTAAAAAATCATCTAACTATCTTCTTAAAATATAATATAAGTAGTAAATTTAGGAAATTTTTAGGGACCTTTCTGAATGTAGTGGAGACAATTTTTACTCAAACTATTTCAAGCCAGAGTATTATCAATATTAAAATTTGCAGCAAATTATATAAAGGAGGAAGCCTGAGCCTGGTGTGTTCTCACATATCTGCCATCCCAGGACTTGGTAAATGGAGGCAGGAGAAGTTAGAAGAGAAGGTTATCCCCACCAGTAAAGAGTTTAAGTTCAACTTGGTTACATGAGACACCATCTCAAAAAAAAAAAAAAAAAAGATAGAATAAATAACTCTAGAAGAAAGCCAACAAATTCATCCATAAATTTTATTACATCAAAAGACTTGAAGTCCCAGCGAGTGGGGAGGTATGGTAGAGTGGGAGTGGGGAGTTGGGGACATCCTCTTGGAGATGGGGGAGAAAGAATGGGATAGGGAATGGTCAGAAGGCAGACAGGGAGGGGGATGATACTGGACAATAAAAAAAAGATTAAAGAACAAAAATATGTAAATTAAAATAAATAAATAAAAATGAAGAAATAAATTAACAAAAGTTACATTAAAAAAGCTAATTTAAGGAATTCAATCATGTGGTATGTAATAACCAAAGGTGAATGCTTATGTAATTGTGTACATGATGTTTAAAAGACATTGATTAAAATTCAATACAAATTTTGATTTTATGAAATTTTGATTTTCAAATTATTATAACCTAAATGCTGTCTTTAATATATGTATGAATGTATAACACATAGAATATGTACAAATTTCTAGTTATATTATTAAATGTTAGGAGGATTTTTCAATGTAATAATTAAAATGCAAAAATATTATTGCCACTGTTACAAAATTTTCTGATATTGGTAAGTGATTACACAAGAAAAGATAAAAAGGTGATATCTATCACATCAGAGTTTAAAAGCAAAAAAGATATAAATAAAAGTATTTGAAAACTTGCAAATACATAATTAAAAAATGTTGATTAGTAATATAATTTGAATGTAACCTTGATAGAAAATTAATGCATAAACAAAAATAAATTTATTTCATAACTAAAACTATCAAAAAACTATAATGTATGAAAATTTTATGACCAAAAATTTGAAAGAGGCAAAATAAACTTTAATATTAAAAGTAACGTAGAAATTACTTTAAAGTTACTTTGAACTGCTAATGAAAAAAAGAATAAAGCACACATAGTAGAAATAGAAACTATTCAAGGATAAATACAACACTTTACAGATAAAATATTTGTGTGTGTGCACAGTCAATGTGATTCTATCAGGATGTCAATATACCATAGTTTAGAATGTCATACTCTTTTTTTTTTATTACGTATTTTCCTCAATGACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCCCCACTTCCCTACCCACCCATTCTCATTTTTTTGTCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCGATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGTAGCTAGAGTCAAGAGCTCCGGGGTACTGTTTAGTACATAATGTTGTTGCACCTACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTTCTCCGTTGGGGGGCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTGGGCCCCTGCCTAGTCTCATGAGAGACAGCTATATCTGGGTTCTTTGAGCAAAATCTTGCTAGTGTATGCAGTGGTGTCAGCGTTTGGAAGCTGATTATGGGGTGGATCCCTAGATAAGGCAGTCTCTAGATGGTCCATCCTTTTGTCGCAGCTCCAAACTTTGTCTCTGTAGCTCCTTCCATGGGTGTTTTGTTCCCAATTCTAAGAAGGGGCACAGTGTCCACACTTTGGTCTTCATTCTTCTAGAGTTTCATGCATTTGGAAAATTGTATCTTATATCTTGGGTATACTAAGTTTTGGGCTAGTATCCACTTATCAGTGAGTACATACTGTGTTAGTTCCTTTGTGATTGGGTTACCTCGCTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGCGCCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTACTCTTGAAGAGCTCATTTTAAAGTTTTTGTTAAAAGTAATTATTTTTATTTCATTTCTCTATCTGTGTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGCACGCACATATAAGTGCAGGTGCTCACCAGGGCCAGAAGAAGGGGCCAAATCCCAAGTAGCTGGAATCTCAGCTTATTGTGAGCTGGAAATAGAACTCAGAGTCTCTGAAAGAGTTATACCCATTCCTAACTGATGAGGCAACTTTCAAGAGTCTTATTTTAAAGTCTTAACGATGAAATAAAGTGCTGTAATACCCATTCTGCTCTGAAAAGAAACATGTACTAATATTGTAGGCACCATTGAATTTTCAAGCATTTTTATGAATGTAGTAAAGTTATACCTGTAGGAAATGGGCAGGCTGATTAGCTTATGTATGAAAATACTAATGCATATGGAGTGAAGCCATAATACACTGATGGCAGCATTCATGTCAGTGACAGGACACAGGTTTATTCTATAAATCATGATATGAAAGTTCAGTGTGCATTCAACAAAGAATAACTTCTGTAAGTTTCATTCCTTCCAAATATCACACACACATATACAAAATTAATGTAACAATAAAAATAAATATGTAACATTATTATAAATGCATTTTATTCATATCTATAATATGAGCCATGAAGGAAAGCTTGACAGAATCAACCTAGGAAAAATAAGTCATTTCATCCCTCTGAAGGTATCATGAACAAAACAGAGAGAATATCCGGAACATATGCATGCAAAATATATGACAAGGTGTGGTGTCACAGTCACCAACTGAGAAGTATGGAGCAAGCCAATAACTTGATAAAAACTAGAAAAGTCTCATGGAAATGAAAAATATACACATTATTTAAATGTAAATAGAAATGTCTAACCTTATTATGAAAGGAAATAAAATTATTAAAACAGAAAAATAGTGCATACTAAGTTTATAGATAAAACATGTAAACAATAATAATTGCTGAGAAAGATGCAATGAACCAGGAAATTCTATTTACTTGTGCTACTATAAAATTAGAGTAATCTTTGTGAACTAAAAGTTTCAGTCACTAGAAAGCATAACATCTGTGCTCTTTATCCACTAG
Seq C2 exon
GTATCATAAGAGGAAGATACCCTATAGAAAAACTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030149:ENSMUST00000032252:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types