RnoINT0080310 @ rn6
Intron Retention
Gene
ENSRNOG00000061739 | Klrk1
Description
killer cell lectin like receptor K1 [Source:RGD Symbol;Acc:3180]
Coordinates
chr4:163398336-163401086:-
Coord C1 exon
chr4:163400938-163401086
Coord A exon
chr4:163398375-163400937
Coord C2 exon
chr4:163398336-163398374
Length
2563 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
CTGTGCTCTTTACACACTAGGTA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCAGTCCATGGACTTGTGTCAACTTGAATTGCTTCCTCCAGAGATGAGCAAATGCCATAATTATGACCTCAAGCCAGCAAAGTGGGATACTTCTCAAGAGCATCAGAAACAAAGATCTGCACTCCCTACCAGCCGACCTGGAGAGAATG
Seq A exon
GTAGGTCTTGGTTTATGTTTGTCTCCTCATGATGGACTGATTTAAATGTGGAAACCTTGCTATTGTCAGTGGCAACCCTTGTTCGTTATACCTCCCCAAGGAGGTAAGCTGTATTTCCCTAAAATTACACATTAGAATGTGTAATCAAGTTACAGGTGATAAGACAATTTATCATAAGGACAACAGAACCAAGAATTTTGGGAATCTACCTTTAAGGAAGAATATATGGTAGACTATAGAAAATAAATTTTAAAAATTATCCAACTATCTTCTTAAACATGATAGAAGCAATAAATTGTGGGAATTTTTAGGAACCTTTCTAAATGTAGTGGAGATAATCTGTACTCAAACCATTTCAAACCAGAGTATTATCAATATTAAAATTTGCAACAATTTATACAAAGGAGGCAACCTGAGCCTGCTGTCTTCTCACATGTCTGCCATCACATGACTTGGTAAGTTGAAGCAGGAGAATTTAGGAGTAGAGGTTATCCTCAGCAGTAAAGGGTTTAAAGTCAACTTGGTTACATGAGACACTATCTCAAAATAAAGTAACTTTAAAAAGAAAGCCAATAAATTCATCCATAAATTTTTATTAAAACCAAAGAAATAAATTAGCAAAAGCTATGTTAAAAAGTTAATTTTAGGAATTCAGTCATGATATATGTAGTAACCAAAGGTGAATGCTTATGTAAATGTGTACATGATGTTGAAGAGGGATTGAATAAAATTCAATAAAACCTTTTATTTTGTAAAATTTAATTTTCAAATTTTTATAAACATAAATGCTGCCTTTAATATATATGAATGTATACACACATAGAATATATGCAAATTTCTAATTATATTATTAAATGCTATGAGGATTTTTCAGTGTAACAATTAAAATGCAAAAATATTATTGCCACAGTTAAGTTTTTGATATTGCTAAGTGATTACCCAAGAAAAGGTAAAAATGTGATATCTGTCAAGTCAGAGTTTAAAAACAAAATGATATAAATCAAAATATTTGAAAACATGCAAAAATACTTAATAATGTTAAAATTAGTAATATAATTTAAATGTAGACTTGATTCAAAATTAATACATAAATTAAAATATATTTATTTCAAAACTAAAACTATCAACAAACTACAATAGAAGAAAATTTTATGGCCAAATTTTTTTAAAAAGATAAAATAAACATTTATATTAAAAGTAAGCTAGAAATTACTTTATTACTTACTTTGAACTGCTAATGAATAAAGAATAAAACACACATTATAAAAATAGAAACTATTGAATTATAAATACAGTACTTTGCTGATAAAATATTTGTGTGTGCACGTAATGTTATTTTTTTCAGGATGCCAATACACCATAGTTTAGAATGTTCTATTCTTGAAGAGCTCGTTTTAAAGTTTTTGTTAAAAATAATTATTTTTACTTCATCTCTCTGTCTCTCTCTCTGTCTCTCTCTGTCTCCCTCTCTGTCTCTCTCTCTCTCTCTTTCTCCGTGTGTGTGTGTGTGTGTGTGTGTGAGATTGAGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACAGGTGCTCATGGGAACCAGAAGAGGGAGCCAAATCCCAAGTAGCTGGAAGCTCAGGTTATTGTGAGCTGGAAATAGAACTCAGGGCCTCTGAAAGAGTCCTACTCATTCCTAACTGATGAGGAAACTATCATGAGCCTTATTTTAAAGTCTTGAGGAAGAAATAAAGTGCTGTAATACCCATTCTAGTTTAAAAATGAAATATGTGGCAATATTGCAGGCACCATTGAATATTCAAGCATTTTATGAAGGTAGGAAAAGTTATACTGGTAGGAAATGGGCAAGCTAATTAGCATAGGTATGAAAAGTGCTAATGCATATGGAGTGGAGCCATTATATGCAAATGACAGGACAGTGGTAGGATGCAGGTTTATTCTGTAAGTTGTGAGATAAGAATTCAGTGTACATTCAACAAAGTATATCTTCTGTAAATTTTGTTTCTTCCAAATATCACACACACACAATTAAATGGATCAATAAAAATAAATATGTGAGATTATTGTAAATTCATTTTATTTTATCCTTAACTAAAATATGAGCCATGAAGGGAAGCTTGATAAAATCAATATGGGAAAAATAAGTCATTTCATCTGAGGGTATCATGAAAAAAACAGAAAGAATATCTCCTAGAACATATGCACGCAAAATATATGCATGTCCTAGTCACCAACTGAGAAGTACATAACAACTTTCTGACAAAAACAAGAAAAGTCTCATAAAAAATATATATTATTTAAATGTAAATGAAAATTTCTAACCTTATCATGAAAGGAAATAAAATCATTAAAACAGAAAAATATTTCATACTAATAGATAAAAACATGTAGATAATATTAATTGTTGAGGAAGATGCAGTGAGCCAGGAGATTTTATTTACTTGTGCTTCTATTAAATTAGTGTAACCATATGCACTGAAAGTTTCTATGCACTGAAAGTTTCTGTCACTAGAGAACATGACACCTGTGCTCTTTACACACTAG
Seq C2 exon
GTATCATAAGACGAAGGTCTTCTATAGAAGAACTCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061739:ENSRNOT00000088151:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.024
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]