MmuINT0089465 @ mm10
Intron Retention
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12497885-12500570:+
Coord C1 exon
chr18:12497885-12497983
Coord A exon
chr18:12497984-12500486
Coord C2 exon
chr18:12500487-12500570
Length
2503 bp
Sequences
Splice sites
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
3' ss Seq
TCCTGCTTCTTTTTAAACAGGGT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GTATCATCGTACGGCGGCTACCTCACCTACCACGCCAAGTCCTTTGGCTTACCTGGAGATATGGTTCTTCTGGGAAAGCAGCCAGATGTGCAGCTCACT
Seq A exon
GTAGGTATTAAGGCGTGGCCTGAGCAACAGGATGCAGTGGCCACAAGTGGGCTGTGCAGAACGTTAGATTGATTTGATCTGATGTCAGCACAGACTGTTTAGAGCACGTGGCACATCTGCCCAATGGGTTCCTCCTTTCTGCTTCCAATGTATTTAGCTATATTTCACGTGAAACTGCCTCACGTCTTATGGTTTTATCTTTCAGTTTAGTCGCAAAAAATGATTTGTGCCCATTCTTTGTGGAACCCTTGCAATACAGGGCAAAATCCCTGGAAAATGGGTCAGGGAGCCATGGCCTGAAGCCGACTCTGTTTCTGATTCAATTGGAAGAGGGACTGCTGGGAATGGAACCCAGGGGCTCACACTTGCTATGCAAACACTCATGGCAGAGGGCCCCGAGTGCTTGGTAGATGTTTGTAGATCTTTGTCTTCAAACACTGCTGTGCTATATTTTGCTTTGACTAGTAAACAAAAGTATTGAATTGTAAAAAACTCATTGAACCTTAGCAGAGCATAATGGAAATTAAGCAACAAAGATTTTAGACTTGCATTAAGAAAAACTGCCATGTGATAAGAGTCCTGTCCCAGCTGGGCAGGGTTTCAGTTCTGTATTTCACAGTAATCTCAGAGCTGAAGCTACTGCTGTATGTAATTTTAAAAATTTTGTAATTATATTTATGTACAGAAAACTTAGTGTACATTTAATCCAGTTTAGTGGTGAGTATTTTAGCCTTTGCCTTTTCCAGCTTGGCAATGCAAGCCACGAACTTAGGACCCAGGACGTTGCCTCCCCAGTGGCGACGGATCCCGTCATATTGGTCATTATAATTGGTCCTAATAGCTTCCATCAGCTTAGCTAGAGCACCCTTGTCTTCCAAGTTAACCTGTGTGAAGGCAACAGTGGTGCATGTCTTCCTGTGGACCAGGAGCCCCAGCCTGGCCTTTCCCTTGATGATGCAGTAGGGCACCCCGATCTTTCGACACAGGGAAGGCAGGAAAACCACCAGCTCAATGGGGTCTACGTCATGGGCAATCACCACCAGCTGAGCCTCCTTGTTCTCAACCAAGGTGGTGACTGTACTGTCTCTTAGTTGGGATGTCTCCTTTGCCAGTAGCTTTCTTCTCAGCATGGGCCAGTAGCCTTTGCTTCTTCTCTTGCTTTGTCTCTGGCCTGTACTTGTGGGCAAGCTTAAGCAGCTGAGTAGCTGTTTGTCTGTCCAGGGCCTGGGTGAACTGGTTAATGGCAGGAGGTACTTTGAGCCGCTTATAGAGGATGGCTCTTTGCTGCTACAGCCTAATGTATCGGGGCCATTTGACAAAGCATGTTAGATTTCTTTTGGACTGGATGTCCTGCCCAATGCCGAAGTTCTTGGGCCTGTTTTCAAACAAAGAATTGACCACCATTTTGGCCTCCTGTTTCTTGACGACGGTGGGGGCCAAGGCCACCTTCTTCCCCTTGGCCTTTCTTCGCCTTGGGCATATTGCTCAGTTGGTGGGGAGAGCTGCTGTATGTAATTTTTACTGCAGAGGACTAGGCTGCACATACTCTTAGAATGTGCTGAGAGGTAGTGATCGTTAATTTTACCTTCAGATATAGAAACCATTTAGGCTCACAACATTTTTTCTTTGTTGCTTTATTTTAAACCACTGTAATTAAGAGTCTTGTTCCTTAGATTAAGGTTTGAAGTGGTTGTGAGCCTCGATCATGTTCTGCCCTCATGAATGGACCGCCTGAGGGTTTGGAACCGACACAGAACAGCTGGGCTGCAGTGTGTGACTTAGGGTGGGGCTGCCATGCAGGGATGAGCCCATGCCGTTTTTTTTGAAGCTCCCTCCCCACAGCCACTTGATGGGGTGGGGCCAAGGCTGAGAGTGGAAGCCCTGGAGTCCTGGGCCCATGTCTTCATCCATAAACTTTCTCTTCTTCAGGGTGCTGAGCACACCAGCTGCAACAGTAGGCTCTATTAATCATTCCTCCATCCCCATTCTCTCCAGCCATCTACCACCAAAGCAAGGTCCCATTGGCAGCTATAAAATGCACTTCCTACGCTTACTATAAAGAATGACTAAAATAACTGCTTTTCCCATCTTTGAAACATTACTTATTTATTCATTTAATATGCATGCATGTTTAATCTGCATGTCTGTCCATGCACAGGAGAGATTCCCTGAGACTGACCTCCCTGGGGATGCTAGGAATTGAACTTAGGACCCGTGGAAGAGCAGCTGGCTCTCCTGACCACTGCTCAGCTAGCTCCCCAGATCTTATTTTTTCCTCCGTGTTTTAAAATCGCTTTTGGTCAAGATAGTTTTCATATTTGTGAAATGTACCATGCTAGCTACTGCTTACCTGTTTCCATGTCACTAAGCCATCAGAGCTGAGTTGTCAAGGGCCAGTTGTTTCATAGGCTGTAGACACACAGAGGAATCTCTTCTAATATCAATAGGACTCTCAAAGCATCCCATCTAAGGCACTAAGGCATTCCTGCTTCTTTTTAAACAG
Seq C2 exon
GGTCAACACATGTCCCTCATCCATAAGGAACCCAGCGACCCACGGCCAGACAGGCTGCATCACGGAAGAGTGCAAGTGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421:ENSMUST00000092070:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.982
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(23.5=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types