GgaINT0098655 @ galGal4
Intron Retention
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102853345-102854288:+
Coord C1 exon
chr2:102853345-102853446
Coord A exon
chr2:102853447-102854204
Coord C2 exon
chr2:102854205-102854288
Length
758 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
ATATCCTAATTCTCATGCAGGGC
3' ss Score
7.44
Exon sequences
Seq C1 exon
CTTTCTTCATATGGTGGCTTTCTAAGTTACCAAGTGAAATCTTTTGGCTTACCTAGTGAAGGCATGGTTCTTCTGGATAAGAAACCTGAAATAATACTAACA
Seq A exon
GTAAGTTTTGAAACAGTTTTTTTTGTCTTTCAAGCAATACCCATGCCATGATTTTTTTTTTTCCTGTTACTTGACAGCTATGGCAAATTTTGTTCCTATATTGTGCTTAACTTTTTATAGCAACTTGCTACATTTCTATGAAAGTGATTTTATTGCATTTTGCTCAAAGCAATCAACACGCCTCTCTCTGATACCAGGGTAGCATATTATTAAGCATAAATGACTTCAGAACAAATAAAAATTTAGATGAATTATTGTTGTTTTTTTTTTAAATTCCCAAGGCAGCGTTTTGGTTTCTTGAGACCATCAGAAATATTAATTCAGCATTCTAGGATTCTCATTAGGAAATATGCCTCATGAAGTATCCAAAGTCATTTGGGTAGCAGGATGTAAGGTCAAAGAGTGTTCCTCAGTCCAATGTCTTTGTATTCCTTTCCGCATGCCAACCTTTTCTAATACTGGAGGCTATGAACTTTGACTTGGATCTAATAACTAATTTCTAATGGCAAACATTAATTTAATTATCTTGTTTTATTTAAAAGCAAGAACATCGGTGGGTTAAAGCAGGGAAAGCACTTCTGCCAATAAAACACAGTACTCATTACTTGTTATGCTTTGCTTACAGAATGATATACAGTTACTACTAGTTTTTATTCTCCAAATAACAAGAATAATGCATTAATCAAATTATATTGCATGTGAATACTTTGCTATTTTACTGTTTTCTGTGGCAATGTTATATCCTAATTCTCATGCAG
Seq C2 exon
GGCCAGCGAATGAAGATTGTTTATGTGGATCCTAACAACCCTCTGCCTGACCGTCAATATTATGGCCGTGTGCAGTTAGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056:ENSGALT00000024287:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCATATGGTGGCTTTCTAAGT
R:
CTCAACTAACTGCACACGGCC
Band lengths:
183-941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]