BtaINT0084095 @ bosTau6
Intron Retention
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33167388-33170721:-
Coord C1 exon
chr24:33170623-33170721
Coord A exon
chr24:33167472-33170622
Coord C2 exon
chr24:33167388-33167471
Length
3151 bp
Sequences
Splice sites
5' ss Seq
ATTGTAGGT
5' ss Score
3.34
3' ss Seq
TTCATATTTGTCTTCCACAGGGT
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTTTCCTCTTATGGTGGCTACCTCACTTACCAGATCAAGTCGTTTGGACTACCTGCTGACATGGTTCCTCTGGAAAAGAAGCCGGATGTGCAGCTCATT
Seq A exon
GTAGGTATCAGAGCACAAGCCAAGTGACAGGAAGTGGCAGTTGCAGCTGGTGCCATTCTGGTTTTAGGACATCACTTCTTAAAAAATAACTTTATTTACATATTTCTTGGCTGCGCTGGACCTTCGCTGCTGCTCGGGCTTTTGTCTAGTTGAGTCGAGCGGGGGCTACTCTTGCTTGTGATTCAGGGGCTTCTCTTCTTGCTGAGCGCAGGCTCTGGGGCATGTGGGCTCTGCAGTTGCAGCTCCCCGGCTCTAGTTGTGGCTCACAGGCCTAGTAGTTCTGCAGCATGTGGGGTCTTCCTGGATCAGGGTTTGAACCCATGTCTCCTGCATTGGCAGGCGGACTCCTCACCACTGAGCTACCAGGCAAGTAAGTCCTAGGACATCTTGATAAGTGGCCTAAGCAGAAGTCTGGATTAAGTCGTTTCCAGTATTTTGTAGAAACTCAAAGGGAAGTTGAGAGCATCTAGCACCTCTTCCAGATCCTGGGTGCTTGACCATCCCAGCCCCGAGTCGTTTCTCTTTTCTTCCCTCCCAAGAACTTAACCATCTCCCTCCTGGCTTCTCACAATCATTGCCTCATCGTAAACTTATTTTATGTATCTGTCATTTAATTTCATTGCACAAATGTTTTTGAGACTTCCCTTTTTGCAAAGTTACATTGCTGGGCTCATGAAGGACAGGTGGTCCCTGTTGTCAAAAAGAAAAAGTGTAATCTAAGGGGAGATGGGCTTCTCTGGTGGCTCAGTGGTATAGAATCTGCCTCCAATGCAGGAGACCCAGGTTCCATTTCTGTGTCGGGAAGATCCCTTGGAGGAGGAAGTGGTGACCCACTCCACTATTCTTGCCTGGAGAATTCCATGAACAGAGGAGCCTGTCAAAGAGTTGTGACTAAGCGACTGAGCACAAACACGAGATACTGAGGAGCCCTTTTGGTTTTTTGAGAAGTGACACCCGCATGCTATGTGCTGGGCACCCAGTCCAGAACTACAATCTAGCAATTTCCTGGAGGGCAGGGGTGATATACCATCCTGCTTTGAATCCCTACAATGTACAGAACCTTGAACATGGGATGGGGTGCCATCGCCTGGTCTTGACTGTGTTTCTGGTTCATGTGCTGTAATTAATGTGTTGCAATCCCAGCTTCCTGAAGGACTTCTTGGTGTATTTTGTGTAAGTGATGCCTGGAAAACCCCACATGTCTCATGCCAGCTGACGGCCTCGCATTCTGGTAGCTTTTTGTGTTCAGGCATGGCTGTGCTGTGTTCTGTTTCTGCTGGCACCCAAATGTATTGAACTGTTGTTTTAAAAACTCAAAGGAACCTTCCTTTGCAAAACATCTTGAAAATGAAGCACCCAGGACTTTAAAGTCCAAGGAAAAATAGTTCCACAATAAAAACACTATTATGACATGCTGTAGATCAGCTTCATTATTTTTTTACAGAGCATCTCAAATTCAGGCCATTAGTATGCCTATGTTTTACTGCCTCTGTTATTATGCAAACTGTTGGAGCTCATGGAGAAGTGAGGACCAAAATTTCTTCTTAATTTATCTTCAAACTTGGAAAGTAATTTAGGCTCATAAAGCATATACTCTGCTGCTTTGTTCCAAACCACTAAAATTAAAAGCTTATTGGGCATGTTTCTTAGATTAAGGTATTAAATGAGTGATTGCAGATAATGCTCTTCTTTCTGAAAGGCCAGCTCTGGTGAATGAAACCTTTAGGGGTTTGGTGCCCCAGCAGAAGAGCTGAGCCTCCTCTGTGTGGGTGTGGGGTGAGGGTGCTGGTGGTGGGTGCTGACTGTCCCATTGTGCCCTCAAGAGCCTCTGTAATGGGGACCGGCGTGCAGAGGTTGAGTGATGGGGCTGGTGCCTGCAGGGTCTTGGGCTGTGGGGTGAGCCCTGCTGCACGTGCCAGCCCCACAGCACCCTGTCCATGCCACCTGCACAGCCCACAGCCAGCCTGCCAGCCTTCTGCCCTCCTTCCCCTCCCCACTAACCCACCCACCAAAGCACTTTCTTGCTCCCTGTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCACCCAGGACTTTAAAGTCCAAGAAAAATAGTTCACAATAAAAACACTATTATGACATGCTGTAGATCAGCTTCATTATTTTTTACAGAGCATCTCAAATTCAGGCCATTAGTATGCCTATGTTTTACTGCCTCTGTTATTATGCAAACTGTTGGAGCTCATGGAGAAGTGAGGACCAAAATTTCTTCTTAATTTATCTTCAAACTTGGAAAGTAATTTAGGCTCATAAAGCATATACTCTGCTGCTTTGTTCCAAACCACTAAAATTAAAAGCTTATTGGGCATGTTTCTTAGATTAAGGTATTAAATGAGTGATTGCAGATAATGCTCTTCTTTCTGAAAGGCCAGCTCTGGTGAATGAAACCTTTAGGGGTTTGGTGCCCCAGCAGAAGAGCTGAGCCTCCTCTGTGTGGGTGTGGGGTGAGGGTGCTGGTGGTGGGTGCTGACTGTCCCATTGTGCCCTCAAGAGCCTCTGTAATGGGGACCGGCGTGCAGAGGTTGAGTGATGGGGCTGGTGCCTGCAGGGTCTTGGGCTGTGGGGTGAGCCCTGCTGCACGTGCCAGCCCCACAGCACCCTGTCCATGCCACCTGCACAGCCCACAGCCAGCCTGCCAGCCTTCTGCCCTCCTTCCCCTCCCCACTAACCCACCCACCAAAGCACTTTCTTGCTCCCTGTCTGGTCCTAGACAGTAGGGGAACTGGTCCCTCATGTTATCTGCAAAGCATGTTTATTGATTTTTAAAAATTGTTTCCATCTTTCTAAGCCACTTTTAGTCAAAGGAACTTTCCTTTGTGAAAGTTTAGGAAACAAAGGTTTCCTATTTGGGAAAATGAACTCTATTAGGTCTTATTATTCCATTTCCGTGTTACTAATCCTTTTGCTTGTCAGTTCATTACTTTTTAGAATCAGTCATTTCATGTAAAGCAGATCTATAGACATTTGTTCTCAAATCAGCCATAAACTTTGAAACATGATGGCCAAGCTACCAACACATTCATATTTGTCTTCCACAG
Seq C2 exon
GGTCAGCACATGTCCATCATCTACCATGAGCCAAACCACCCCCGGCCAGACCGGCTGCATCATGGGCGAGTGCAGATGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181:ENSBTAT00000060991:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.679
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(23.5=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]