RnoINT0003565 @ rn6
Intron Retention
Gene
ENSRNOG00000011300 | AABR07031193.1
Description
NA
Coordinates
chr18:3856069-3857890:+
Coord C1 exon
chr18:3856069-3856167
Coord A exon
chr18:3856168-3857806
Coord C2 exon
chr18:3857807-3857890
Length
1639 bp
Sequences
Splice sites
5' ss Seq
ATTGTAGGT
5' ss Score
3.34
3' ss Seq
TCCCTGCTTCCCTTTATCAGGGG
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTCCTCCTATGGCGGCTACCTCACCTACCAAGCCAAGTCCTTTGGCTTACCTGGAGACATGGTTCTTCTGGAAAAGCAGCCGGACGTGCAGCTCATT
Seq A exon
GTAGGTATTAAGGCGTGGCCCGCGCAGCAGGAAGCAGGAAGCAGTGGTCACCACTGGGCTGTGCAGAACATTAGATTGATTTGTGTCTGAGGTTTTGAAGACACTCACATAGAATGTTTAGAGCACATGGCACGCCTGCCCGGAGGATTCCTCCATTCCCCTTGCAACGTATTTAGCTATACTTCACTCTCGAAACTGCCTCATGTCTTATGGTTTTATCTTTCAGTTTCAGCTCAAAAAATGATTCGAGCCCATTCTTTGTGGCACCCCGAGATAGAGGACAAAATCTGGAATATGAGTTAGGGAGCCGTAGCCTGAAGCCGACTCTGTTTCTGCTTAATTTGGAAGCAGGACTGCTGGAGATGGAACCCAAAGGCTCACGCTTGCTGGGCAAACCCTGGAGCTCGGTTCCCACCTCCACGTCTGCATCAGATGCTAAGCGGGCAGCTCCATAGTGGAAATTAAGCAGCAGAGATTTTAGACTTGCATAAGGAGAAACTGTTATGTGATGAGAGTGCTGTCCCGGCTGGGCGGGGTTTCTATTCTGTATTTTACAGCAACCTCGGAGCTGAAGCTTCTGCTGTAATTTTTACTGCAGAGGACTTAACTGCGCGCACTCTTGGAATGTGCTGGGAGGTAGTGATCAGAATCTCACCTGAATTTTACCTTCAGACATAGAAGTCATTTAGGCTCACAAGTTTTTTCCTTTGTTGCTTTATTTGAAACCACCATAATTAAGAGTCTTGTTCCTTAGATTAAGGTTTGAAGTGGCCCATGAGCCTCGATAATGTTCTGCCCTCATAAATGGACAGCCTCAGGGTTTGGAACCCACACAGAACGGCTGGGCTCAGTGTGTGACTTTGAGTGGGGCTGCTGTGCAGGGCACGGACAAGCCCGTGCAGGGCACGGACAAGCCCATGCCGTTCTGCGAAGCCTCCCGTAGCCACTGAGTGGGATGGGGCAGAGGCTGAGAGTGGGGGCCACATCCCACATTGGTGGGCCAGAGTCCTGGGCCCCTGTCTTCATCCATAAACTTTCTCTTCTTCTGGGTGCTAAGCACACGGGCTACAGAGCTAGGCTCTGTTAACCCTTACTCCATCCCCACCCTCCCCAGCAATCTACCACCAAAGCAAGGCCCTATTGGCAGCTATGAAATGTACTTCCTACATTTACTATAAGGAATGACTAAAATAAATACTTTCCCCACAGTTTTAACATTATCTACTCATTTAATACGTATGAGCATTTAATCTGCAGTCTGTCCATGCACAAAAGAGGACACCGGTTTCCCTGGGTTTTACAGATGGTTGTGAACCGCCCTGGGGACACTAGGGGATGAACTGAGGAACTCTGGGGAAGCAGCCAGTTCTCCTGACCACTGCTCAGCTCTCTTCCCAGCTTTTATTTATTTTTCCACATTTTAAAATCACCTTTGGTCAAGACCGTTTTTGTAGTTGTGGCAATGTACCAGATCAGCTACTGTTTACTTGTTTCCGTGTCACCGAGCCTCCAGAGCTGAACTGTTTAGATCCAGTTGTTTCATAGGCTGTAGACCCACGGAGGACTCCGTTCTGACATCAGTAGGAACCTCAAAGCACCCCAGCTAAGGCACTAATGTATCCCTGCTTCCCTTTATCAG
Seq C2 exon
GGGCAACACATGTCCATCATCCATGCGGAGCCCAGCGACCCACGGCCAGACAGGCCACATCACGGAAGAGTGCAAGTGGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011300:ENSRNOT00000092846:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.964
Domain overlap (PFAM):
C1:
PF0005213=Laminin_B=FE(23.5=100)
A:
NA
C2:
PF0005213=Laminin_B=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCCTCCTATGGCGGCTA
R:
TCAACCACTTGCACTCTTCCG
Band lengths:
182-1821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]