MmuINT0090022 @ mm9
Intron Retention
Gene
ENSMUSG00000038366 | Lasp1
Description
LIM and SH3 protein 1 [Source:MGI Symbol;Acc:MGI:109656]
Coordinates
chr11:97686156-97695016:+
Coord C1 exon
chr11:97686156-97686263
Coord A exon
chr11:97686264-97694859
Coord C2 exon
chr11:97694860-97695016
Length
8596 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGA
5' ss Score
3.37
3' ss Seq
CCATTCCTTCTGCCCCACAGATC
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTGCGCTACAAGGAGGAATTTGAGAAGAATAAGGGCAAAGGTTTCAGCGTGGTGGCAGACACGCCTGAGCTGCAGAGAATCAAGAAGACCCAGGACCAGATCAGCAAT
Seq A exon
GTGAGACCCTGCCCTGATGCCCAGGCTACCCTCTGCCCTCCCTTCTCATCCTCTCCCTGACAACCTCAGCAAAGGCCCACGCCGCAGTGGTCAGATCAGAGGCAAGGGGGAGGGAGTTGAGGTACCCGGGAGCCTTTTCTTTGTTCTCCCTCTTTGGTGGGCACTCTGCCCAAATGGCATTTCCTCCTTAAAGAGACTGCTCTTTTAGAGGCAGACAGATAGACACACAAACACATACAGAGTGTCTAAGTCACCTTCCATTCTCTGGAGCAGACCCCGTTCCCTGGTCATGGTGGGGATGGGGTCGGAGTGCAGATTAGATGCTTGTTTTTAGCACCAGGGTCAAAGCTGGGGTTGGGGGTTGAGCCTCCTGTCTGCCTCTGGGTGCTAACACAGCAGTCATTTCCGCCCTCCCTCGACTGCCTCCCACCTCAGTTTGTTCTTCCTTCCTGTGTGAAAACCCAGCTGGCTTTGCCCACAGGCCCTACACCCCCTCCAGGCCCTTTCAGGCCCAGTCAGGGACTGGTCATTGGTGTCTGGTTGTGAGACATAGGCGTGGAGAGTGGGTGGCGGAGTGACTGTCTCTATATGGTTCTGTAGAGCAGCTGGGGTTAGGGATCATCGCTCAGTTCCACCCTTACATAGCCGCAGACCAGCAGCTTGTATGGCTCCGGGTTTGCAGGGGCCGGGTTGGGAGTATGTGGGTAGGTGCTGCTGGGCGTGACGTCACAGAACATGGGCACAAGCCTGAATGCCGAGTTATAGAACATGCCCCGTCATTGGCAACAGACTCCTTATAAATGAAGGATGAAGCAGGCCGATACGATACCCTCGTGTCTATCACAGGAAAGGGTCTACCAGTTTGCCTGTGTCATTCTGGGCTGAGGGACTAAGGATGGGGAAGACAGGATCCAGATTCAGGTGGCTCGCCTTGCACACACCCTCCAGGATCATCTCTCCCCATTCTGTCGCTGGACAAGTCTCATAGCTCACTGGTCTGCGCCGCCCCCCCCCCCCCCAAACACCCGGCACAGAAGCACCCTCTTGCAGGGTGGTTAACGCTCTGATTCTGCCCTCTGTCTTGTTTAGTGGCACACACCTGTAACTCCCAACATTTGGGAGGCTGAGGCAGGAGAGTCATGGATTCAAAGCCACTTGAGGCTGAGGCACGATCAAGAGGTTGAAGCCGTCCTGGGCTTTATAATAAAACACACGCATGCGCACACACACCCTCTTTCCCATGCACACGAAACAAAGAAAACTTCTTAAAGGAGGGAGGGCTGAAGTTTAGTGATAGAGCGTGCACAGGGCCCAGAGTCCCCTCCCTCGCACTACAAAGAGGAAGCATAAGTGACTGCTTTTTGGGGGGGTGGGGGTGGAGGGGGGACTTGGAAAGTTCATTCAGTATTTTCTCTTGTTTCATTAAAAATGCTGGGGGCAGTCCAACCAAGTGGGCTTTGCAACCCAGTTGTTGGGCTGAAGTTTAAAATGAACAGCCTGTTGAATGACTTCTCCTGAGCTGGAGGGCCTGCCTCAGAAGGCTGCAAACCCTTCTTGGCCCCCCAGGAAAGCCTGCTGCAGTTTGCCCTCTTCCAGTCTGGGCCTGGCTCACACCCTGGCGTTTCCTTTCTGCCTCAGATCACACAAAGGGTAAAAGGGTGTGCCCGGAGCGCCTCAGATCGAAAGAGGGGAAGTGGTGTGGTCTTGGGTGATTGGGAAACTGGGATGGCTCACAAAGGTGGAATCATGTGGCTTTGTGTCTTGAGACGCTTCCGGTCAACCTTTGGGACATTTCATTCATTGATTTACCGGGTTAGTTTGGAAGAGAGAAGTAGCCCTAGCCATCTCTGCCTTACTTTCTTGGAAGGTTTCCCGAGTGTCCTAACACCCAGTCTCTTTCACCTACCTTCCTGCACCCTGTTACTCGACGTTGGGCACATTAAATGCCTGAGGAGTTCTGGTAACAAAAGCCTACAGTAGCCACCGTATCTACACTACCGATAGCATCTTATCAGCCTCTTCGGAGAGGCAATTAGCTGATTGCCTTGGTTCGAGGCTGGGGGAGGTGCTTTGGATCTGCCTGAGCTGGCAGGTGTAAAAGCCGGAAGTCTTTCTCCTGGTTTTAGGGAGTGTGACCAGGGTCTGTCTCTGTCAAGAGTCCCGCACAGTCAGCTGGGCTGCAGAGCTCCAAGGAAGAGGGCTTAGCATCCACAAGGACCCATGGGTTCAGTTTTCTCCATACACAAAGGATCCCCTTCTGTCATCTGGGCACTGAATGAAAACTCAGGCCTCTGTCTCCCAGCATTCCAGATTGGCACCCCTGGACCGGAGCCTAACATTCAGCATCATCAGCTTGCCTCGGGGCTTACTGTGGTACCGACTGAAACTTATCGCTTAAACTCATACGGTCTTACCAACCCCTAAGTCCGAGGACACTGGGCATGACTATGTCCCAGAACCCTGAGGGAACTTTAAACCACAGGCAGAACTGTGGCTTAGTTGGGCCAACCTCCAGCATCCCTCTCTGAGAAAGGTGCCGTTCAGAGCCACACTGTATTTTTGGTTCCAAAATAGCATCCTTGTTCGTGGCTCATCTCTTCCCAGTTTAGCACCTAATGACTAGTGGTCAATTCTGAAGGTCAGACTTGTCTTCTAGAGATGGGGACTGGCTTCCCTGGAGAAATCACTTCAGACAAAGGACTTTCACCGGCCAGAGCAGCTGAAAACTAAGTGACTATTTTCCTGGAGTGGTCATCTTTGCTTGGGGATGTGAAGTCTACCTCAGTCCTGTGTAAGGCAAGAGAGTGAGAGAGAGACATGTGGTCTTGTTCCAGGCACGCTGGGCTCCCACCTTCCGTCCCACAGATGCTAGAATGCTCGGGAAGTGCCGAGTGCTTTGTTAGTGATGTGTCATCAGGAGTGTTCAAGGCAGGGCTATCTGCTACTTGCATAGAGCAGAGTCATGCAGAGCCTGGGGTACAGCCCAGTGACAGAATGTGGATTTAGCATGCATGGAAGCCATGAGGCTCAGCTCTAGGGGAGAGGGAAGAGAGGGAATTACATATTTGTTATAACTCTGTCTTCATGTGCTATGGGCGTAAGAGCCTTCCATTTGCAGTCTTTGTGTTTGCTCCAGAGCGCTGAGGGCTTGAGTGGATAAGAAACGAGTTAGCTGGCACCCTTAGTGTGAGCCTTCCTTCCAGTATACATGTCTACACATGCAGCCTCAACTTTTGTGCACCCCCTGTGAACCAGACAACAGTATAAAGCTCTTCTCTCACTTTGCAAATCAAGGACCAGGTGTGTCTCAGGGTGGTGGAGCATTTGCCTCACAGGCATGGGGTCTCAGGGTTAATCTTCAGAGTCCCTTAAAGAAAAAGAAAGAAAGAGAGAGAGAGAAGGAAAGAAAGAGGGAGGAAGGAGGGAGGGAGGGGAAAGGGAAGGATATTCGATTCCTGTCCCAGCTCTAAGGGGTTTGTAGAGCCTTAGTTCTGGGACCCTCTTAGCCCCTATCCCAGGTTTATCAGTAGCTAGAGACTCCTCTGGGCCAGAGAGAGGCCAAGGTGGGGCCAAGCCTTGCTGGTTCCACACTGGCTAATGACCCACAGGATGGTAAAACCATAAAATCTGCAGACACTTTTGCTCCAGGTGAGAATCCTTTGCTTTCCTGTTAGCTAAAAATAATCCACATTCTATGCAGTAAATTAGTTTTAGTCTTCAGTGTTGGGGCCTGATCAATAAATAGTAGTTAGTTGGGGGGTAGGTATTGTGAGAATTACCTGTAATTTAGTGCCCTGTAGGCTGAGGCAGGAAAGATGCTGAGAATTCAAGGTCACCTAGACTACACTCTGAGACCTTGGATGGATGGACGGACAGACGGATGGACAGACAGCCAGGTGTACAGACAGACAGACAGAAGAGAAAGAGAGGGAGGGAGGGAGGGAAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAGAGGTAAATAATTGTAAATTTTCATTTCCTCCCCAGAGTTAAATGGTCAGGAGGCAGGCTCATTAGATCCCTTAGATTTCTCAGTTATAGAGATTTGCTTTGTTTTTGTTTATATGCATGTGTTTCTATGCCCCTTGTGTGGGATGCTCTCTCTCAGGCTGGATGAAGGTGTGGATTCCTTAGAACTGGACTTACAGGAGGTTGTGAAACCACCTCACAGGAATGGAGGCTCTAGGGACCAAACTGGAGTCCCCTGGAAGAGAGAGCAGCATATGTTCTTACCCACCGAGCCTTCTCTGTGGTCCTAATTCTCAAGTTTGATTTTTGAAAGGCCACGTTTGTCCATAGCTACTTCCATCTTTCAAGATCTGTCGTTATGGAATGCTTGCTTGCCTGTGTACCTGTGCACCACGCTGTGTGTCTGCTGCTCTAAGAGGCCGGAATGGGCCAGGGAAATCTCTAGACCTGTAGTTTTCAGGCAACTGTGGATTGTCTGTGGATTGTCTGTGGACAGTGAGAACTGAGCCTAGAACCTCAGCATGAGCAGTGGACACTCGTAACTGCCGAGCCATCTCACGTGCCACATGAACCAAGTTTGGCGTCAAACTGGTCCTGCCTGCTTGAGTGCTGCGGTTACATGCCCAGCCTATGTGTGTTCTAAAAATACCAAGAGTCTCTCACCAGTTGCCTTTAATCCCAGCACTCAGGAGACAGAGGCAGGTGGATCTCTTGAGTTCCAGGCCAGCCTGGACTACAGAGGGAGTTCTCTGGACAGCCACATCTACACAGAGAAAAGGAACTCTGTCTCGAAACAAAACAAAACCAAAAACAAACCATGAATCTCTAATAGGAAGCCAGGCTGTGTGTTAGTGGAGAACTAAGGCTCTTAAGTACTAACAGTAGATTCAGTTATGATCCATTTAACCCAGCCCTTCTTCAGCCTTGGTTTTCCCGTCTATAAAATGGGGACAATAGTGACATGTTATTGGGCTGGGTGAGAAAAGAGGGTGCTATATAAGGCCACAAAGCAGGGGTTCAGCCCTCAGCCCTCTCCCCCTCCTCAAGTGGGCTGGCTCGTGAGAGTGAGCTGCTCATTCCATTTAACGCTTCATGTTAGTAAGCCGTGACGAAGCATCATGTGGGGAGGGATGTGTGTGGCCTGGTCAGGCTTTTTGTCAACCACAGACAGGAAGCAGGGAGTCAGAAAGCAGAAACTGAGCCTCAAGGGCACCCGACCCAGTCACACAGAAGGCCTGCCTGACAGCCGTCCTCAGGGGCACCCGGCCTAGTCACACAGAAGGCCTGCCGGGCAGGGGTCCTTCAGCCCCAGTCTCTGAAACCTTGTGCACAGAGACTTGATGGTGCAGGAAGGGTTGGCTCCCTTCTGTGGAGGTCCAGCATTTGGGGACTGGAGAACTGACTCAGCACGGGAGAACACTTCTTGCTCTTGCAGAGAACCTAGGTTCAGTTCCCAGCACCCATGTGCTGGCTCGTGAGCAGAGCCGAGTCCTGACTGTCAGGACCCTCGGGAGGGTAAAGAAACACCCTCCATGTTTGCTTAGGAAGCTGCTAGGTGGGCCAGGAGAAATCACCCTGCTTCCCCTTCTTGCTGAGGGGGAAGTGGAGGGCAGGGGCAGCCTGAACAGAGCCTCCTAACGTTTCAGCCACTATACCCCATGCTTCTGGGTCCTCCCCAGGGTAGGGTAGTCCGGTGATCATCCCCCATTTTTAGGGGGCCTGAAGTACTCTAGATGTTTGGACAGAGTTGAGAGAACAGGGAGGGGTGTGTGGTGCTGCCTCACACTTAGCCTAAGGCTTGTCTGGGTGGGGCTTTGTCCACTGTTCCAGTGAAAGGTCCCGCATAGAGCTCTCCAGGTCCTGCTTCCTCTTGCTTGAAATGAAAGCGTGCATCCGGCTTGAATGATCACTTATTTAGTGCTTGTGTTATCGAGGTCAGGGATAACTTGCAAGTCAGCTTTCTCCTTCTGTGTTTGTTCTGGGAATCAGGCTCAAGTCATCAGGCGAGTGCCCTGACTTTCTGAGTCGCCATCTTGCCAGCCCCCTCCTTCCTTATAGTTCAGGGGAGATAATGTGTGGAATGTGCTTATGGCCTTGGTGTTAAGGGCTGCGCAGATGTTAAGGTTGTTAACACTGACAGTGGCGAGTACACTGATGGTGGTGAGTGGCGTCTGTGGGTCAAGGGAGGATGGGATTGTCTTCCACTGTTCAAGATGCCGGAGTCTTTGGGGTCTTGTTTTATACGCATCTTCCCTCGAGACTCTGACTTTGTTAGATTGGGCCTTGCTATGTAGCCCTGTCAGGCCCAAAGCTCACTATCTAGACCAGGCTGGCCTTGAAAGTTCGTGGCATCCTGCATCTGCCTCCCGAGTGTTAGGTTCATAAGCATATGCCACCCTTCTTGGCCGCACACAGGGACTTCTAAGAAGTGAGGTGGGTGGAGCTAACCTGGAAATACTCCTGTCCACATACCTGCCCTCAGAACTGATGGGCGTCCTCAGGGTCACAGGGGAATAGGTAGTAATTAGAAATTAAAAACAATTTTTTTTAAAAGATTTATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGAGTCAGATCTTGTTACGGATGGTTATGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAATCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCAACAATTTTTTTTTTAATATGAGAAGGTTGTAGTCAAAAATCCTTGGAAGAGCAGTTCTCTTGTGAACCTTACAGGCGGCATTCTCCACTGCTTCCTATTGGCCACAGAGCAGGGTCCCTAAGGAGCTAGAGAGGTCCCCTGCGTCTGTGCGTACCTCACACCTGTGTGTCCTTCCAGGCGGTGTGAGAGGTTTACCCCTGTGAAATGTTAGTCCAGCTGCCTTGTTCCAGGCTGTTTCAGCATTTGGATGTGTGTCCCTGCTTGGTCGTGAAGGATAGGACAGAGAAAGGGAGAGAGAGGTCTGACTCTACCCAGACTCCATGAGTGGGCGGCTCTCTGCTTCTAGACAACACCCTTCCCACACTCCATTGTCGCGCTGGCTGCTGCCCTGCCTGTCCGCCAGCCCAGACTACAGCAATAACCATTATTTAGCCAGCGGTAGTGACCCAGGTACTCCCAGTTGGCCGCAGCCCTGTGCTTCCTGCCGACTATGCACAGAGAATGCCAAGGGTGGGGAAAGCCTGGGAAGGGGATAACCTAAGCCCTCACTAGGACTCTTGGGTCTCCAGAGCTCTGGGTTTGGCTCCTTCCTTTTCTGTTGTTAAGAACATGAGTGAGTTCGCCCAACTCCCTTACTCATCCCTTCCGCTGCCGTTCTCCAGGGTTGAGAGGGCAGGCCAGAGTCCTGGTAAACAAGCAAGAAGCAACATCTCGGGCAGATGCTGAAGCCTCCAGAGAATGGGACAGTCACCATGCTGTTGTCTCTGTGTCTCATTCCTTCTACCCAAACCCTGGGCCTTCTTTCTTTCCCCTTGGTTGATCTCCTCCCAACCCCCAGTTTCCTCTGGGGGAACAGGGAGTGGACCTCATGGAGGTTCTTCAGGCAGGGAGGGTGTGCCCCCTGGGGGTGCAGGAAGGACACCCAGACTCTCTGCCTGCCGCTTCTCTGCCTCATGTTTTGTCCATCACTTAAGTGTGCATTTTACACTATGTGTTCTGCATTTGTACAGTGACAGTCCTGTATCCTTATTCTAAAGTACTATGTGCTTTGTGGGGATTGCGCTAAAGTCACCCAGGGGAGTATTTGGCCTGTCTTTCGGCAATCCAGGGACTGGCACAGTCATTGTATCATGTGCTGACCATATAAAATGAGCAGCAGCCTAGGGCCGTAAGTAGGAGCGGCTGTGGTGGTTACTGTTGACTGAAGGGGGAGCGAAAAAGGGTCAGGCCCTGCCACCGGGAAGCAAGCTCTCCCTTCTTTCTCCCCTTTCTCCCTCCTCGTCTTCTGTCTTTCTTTCTTTAGAGATAGGGTCTCGGGTAGCCAAGCCATTTTGCACTTTCTGTTTTGAGGTTGGGTCTCACTGTGTAGCCCTAGATGGCCTAGAACTGGCTAAGTAGACCAGGATAGCCTTAGTCTCAGATCTGCCTGTCTCAGCCTCTGAAGTGGTGACGTTTATATACCATGCCTGATTTTGTGCAGAATATGGGGCTTTGTGACCAACCAGTCCTCGCATGGATTTCTTATAGCTGGTATCTCCTTGTACTGTGCAATAGCACATAGCATTAAGGAGGTGAATGTCTGAGTTGAAGGGCAACCTGGTCTACATAGTGAGACGTTCTCACCCAAAAAAAAAAAAAAAAAAAAAAAAGTTTAGCTGAGCTTGTCATGGTCAAATCACTTAGACACACACGCACACACACAACACGGTCTCGCTATGTTGCTCAGACTGGCCTTGCTCTCCCGGCTGCCTCAGTAGCTAGGACGGTGGTCACTTCACCACCACACCCTGCTTGAGTGGCAACAGGAGAGAACTGGTTGGCTCGCAACGGAACCCTTCACCCACCCATTCCTTCTGCCCCACAG
Seq C2 exon
ATCAAATACCATGAGGAGTTTGAGAAGAGCCGCATGGGGCCCAGTGGAGGAGAAGGGGTGGAACCAGAGCGCCGAGAAGCCCAGGACAGCAGCAGCTACCGGAGGCCCACAGAGCAGCAGCAGCCGCAGCCTCACCATATCCCGACCAGTGCCCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038366-Lasp1:NM_010688:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0456712=RNA_pol_Rpb2_5=FE(50.0=100),PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0456712=RNA_pol_Rpb2_5=PD(11.4=38.1),PF0088013=Nebulin=PD(37.9=52.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: