MmuINT0090062 @ mm9
Intron Retention
Gene
ENSMUSG00000023021 | Lass5
Description
LAG1 homolog, ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99577468-99581772:-
Coord C1 exon
chr15:99581667-99581772
Coord A exon
chr15:99577599-99581666
Coord C2 exon
chr15:99577468-99577598
Length
4068 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTCTGGTCATACATGTGCAGTAT
3' ss Score
3.76
Exon sequences
Seq C1 exon
ATTTATTGCCAAGCCCTGTGCACTCCGTGTTGGCATTAAAGACAGTCCTGTCAATAAGGTGGAACCCAATGACACCCTTGAGAAGGTGTTCGTATCTGTTACTAAG
Seq A exon
GTAAGTGAGCCGGATGAAGGCCACAGAAGGGTGCTCCATAGGTGGGGAGACAGCATATGTAAGAAAGGTAAGTGTGGAGGTTTGAATAGGTATGGCCCCCATAGACTCATGTGTTTGAATGCTTGGCTAATGGACTAATGGAGAGTAGCACTAATAGGTGCGGCACATGGCCTTTGTGGGGGGGGTCTTTTTGTTTGTTTGGGTTGTTTGTTTGTTTGTTTGTTTGTTTGAGTTTCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGTGCCACCATGCCCAGCTCTGGCACATGGCCTTTTAAAAGAAGCATGTCACTGTGTAGGTGGGTTTTGAGGCAATATATATCTGGCTGCGCCCAGCACCATGGCTGCCTGCATGATACCATGCTTCCCACAGTGATGATAATGGACTGAACTTCTGCAACTGTAAGCCAGCCCCAATTGAATGTTGTCCTTATAAGAGTTGCCTTGGTCAGGGTGTCTGTTCACAGCAATAAAACCCTAAGACAGAAGTTGGTACCAGGAACTGGGGTGTTCCTCTGATATGCCTGATCAATGATCAAGCTTTTTTTGTTTGGAGGTATGTGGATTTTGGCACTTTGGAAGACAGTGGGATGCTTTAAGTGGGAGTTACTGGGCCATCCTAATAAAAGCATGGAAGACAGTGGTGCTGAGGGAGATCTGAACTCAGGGGCGGGGGTGGGGGGGGGCTGGCTCAAGAAGTTTCAGAGGAGAAAGAAGAATTCCGGTATGTTGCCTAGAGATCATTCTTGTGATGTTTGTAAATGTGGCTACTTTCTGTTCTCATCTGAAGAGTCTTCCTAGGCTAAGAGAAGAGATTTAGATTAATTGCATTGACAAAAGAAATTTCAAAACTGCCTAGCATAGATAGACTCTGTCCTGTGGGACTCTCTTATGAAGAGTGTTTTGATCAAGTGTAGCAAGCTTAGGAAAGAAAAAAAAAAGTATGGTTCAAGGATTAAAGGGCAGCAGGAAGTAGAATGTTGCTAAATCCTGTGTTTAAGAATATTAAATGGAATTAAGGGAGTGGTGACCTCATGGCAAGAATCCACCCAGCTAAGCTTATTGTTTATGCATTTGCAGTTGGACAAGGGACAGTTCTATCGTGTTAGGCATGATCATGACCTGGTTATTGTTTTCATTTGGACATAAGGAGATATGATTGTGTATCAAAGTGGCAAGGGATTGGCTGTGATACCTATTCTCAGTTATCAGCTTAACTATATCTGGAATGAACTACAATCCAGAATTTATAAAGATGTTGTGTAAGGAATTAGGGAAAGGTTAGGTCTGAGCATGGTGGTACATATCTTTAATCCCAGGAGACAGAGGCAAGCAGATTGCTGAACTGAAGGCCAGCCTGGGACAGAGCAAGATCCAAGTAAAGAAAAGCTTAGGTCTAGGCCTGATGTTATACACCTTTAATCCCAGCACTCAGGAGACAAGCGTGCAGATCTCAGAGTTCAAAGTCAACCTACAGAGCAAGCTCCAGGAGAGCCAAGCTTAGGCAGGGAAGGAGTTGGAAAACAGAAAGCTCGTGATAATGTAATAGAACAAGGGGGCCATGTTCCAGCTCCTGCAAGCAGCAGAACTGAGCAGCTTCAGCCATGTGGCTCTGGCTTTGAAATCAAGAGTAGAAGGGACTACTGGGACAATTGATACTGGTTAGCTGGAGCTAAAAAATTAGCAGTGATTAAGAAGAGATCAGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCTAAGGTTACACAGAGAAACTCTGTCTCAAAAAACAAAACAAAACAAGACAAAACAAAACAAAAAAAAAGAAGAAGAAGAAGAGATCAACATCACAGAAGTGAAATCTTCTGGGAAGTGTTTTCTGAGAGCACAAAGAAAGCTCGTTCCAGAGGTAGACCCTGTTGCTGGCAGCCAGAATTGGTAGTCTGTAAGAGTCACCCAAGTGGACTGGTTTTGAAGGCATGGAGGGGTCATGGAGAACAGCTGAGGCTTGGCACTATGAGAAGCCAGGAAAGGTGAAGATGTAACCTTCAGTAGAAGCTGAAGTTGAAGCTTGGCACCACGAAGAGAGCCTATGAGATGCAACTGGTGAAAGTGCAGCCTAATTACAGTGGAAGACACCCCAGCCTATTGGAGATGCCAGTACCAAGAACAGCAGCATTCGTGGTACAAAGCCAGACAGAGCCTAGAGTGCAACAGAGGGCAGAGGTGGAGAGGTGACCCAATCCCTTTAGAGGAGCCCAGATCATGTGTGGATCCCAGACACTGGAACAAGAAGCTGTAAAGTTGAAGTTGCCTTGGAGACTCCAAGATGTTAGAGATGCCAGAGCCATGGGAGACATGGGGAGGAAAGCTGCTAATAACTATTGTGGTGCAGTCAGCAAAGCTAAAAGGAGTTGGGCATCAGACATGAAGATGAAGGCTTTCGAGTTTACCAGGCTGGTTTTCAGTCTTGCTTTGGTCCAGTGTTTCCTCACTGTGCTTTCTTCCCTAACTTTTGGAACAGTAATGTCTGTCCTGTGCCGTGATATGTTGAATGTATGTGATCTGTTTTTAATTTTGATTTTAATAGGGGATTACAGTTAAGAGATTGTATGAATCTCAAAAGAGACCTTGAACTTTTGACTTTTAAGCATTGCTGAGACTGTGATAGACTATGGGGACTTTGGAAGTTGGACTAAATGCATTTTCATTATGTTATAGCTATAAGCCAATGTGGCCAAGGAGTGGAATGTGGTAGTTTGAGTAGGTATGGCTCCCATAGATTTATGTGTTTGAATGCTTGGCCCATGGGGAGCGATACTAATAGGAGGTATGGCCTTATTGGAGAAAGTGTAGCCGAATTAGAGGAGGTATGGCATGTGATTTTGTTAGAGGAAGCATGTCACTGTGTAGGTGGGCTTTGAGGCAAAATATATGCTCAAGCTTTGCCCAGGGTGAGACACAGTGGTCCCCTTCTGCCTGTCTTCGGATCAAGATGGAGAACTCTCGGCTCCTCCAGCACCATGGCTGCCTGCATGATGCCATGCTTCCCACCATGATGGTAATGGACTGAACTTCTGCAACTGTAAGCCAGCCCCGATTGAATGTTGTCCTTTATAAGAGTTGCCTTGGTCATGGTGTCTCCTCATAGCAATACAGTAAGGATAGCTAAGACAGGAAGGATAGGAAGGGGTGGCTCTTCACACCTAGGTGGTCTCTTCTCTCTGTAGGGAAGGTTAGCCTCTTGGAATACCTACCTTTCTGCCAGAATCTCCAAACTGTAATAACACCTTTAAATTTTATTCTTTCTTAGCATCTGCCTCCACTTCTCTGCCCTAAACACACATCATGTCTTTTTTCCACCTTTTCTTGCTTCAGCTTTTAATCAACATGAGTGTGGTTCTAGTGGCCTTTGTATTTTTTGGGGTTTTTTGCTGTTTTTGTGTGTGTGTATATATATATATATATATATATGCCTGTTTGTGTATACTGTACTCCCTTATGCATGCCTGGTGCTGTTGGGGGACAGAAGAGGACATTCAGATCTCCTGGAACCTGAGTATAGATGGCTGTGAAGTGCCATGTGTGGTGTTGGCAGCTGAACTTGGTCCCTCTGCAAGAGCAACAAGTGTCTTAACCAATGAGGCATCTCTGCAGTCTGGTTGCGCGCGCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGGTAATTTAGACCTGCTATTCCATCCTAACTGTGCGGGAGTCCCCAAGACATATAGAGTTTGACTTCCTTAAACCAACTGTGTGATGTTTTAATTAAGTTAATTAGAATTAAATAGCTTTATTAAAATAATTTGGAGGTAAAACATGGAGAAGCTGTGTAGTAGCGCTTGAGCCACTGTGGTCGTCATCCTCGGCCACAGGCTAGTAAGAGGGATTCAGTGGGGAATTGTGGAGAAGGCATGTTCTAACTCTGGTCATACATGTGCAG
Seq C2 exon
TATCCTGATGAGAAAAGGTTGAAGGGCCTATCAAAGCAACTGGACTGGAGTGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGGAATCAGGACAAGCCTCCAACGCTCACGAAATTCTGTGAAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021-Lass5:NM_028015:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(30.0=41.7)
A:
NA
C2:
PF0004624=Homeobox=PD(66.0=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: