RnoINT0034891 @ rn6
Intron Retention
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141398347-141402564:-
Coord C1 exon
chr7:141402459-141402564
Coord A exon
chr7:141398478-141402458
Coord C2 exon
chr7:141398347-141398477
Length
3981 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGT
5' ss Score
10.75
3' ss Seq
CTCTGGCCATACATGTGCAGTAT
3' ss Score
3.64
Exon sequences
Seq C1 exon
ATTTATTGCTAAACCCTGTGCACTCCGTATTGGCATTGAAGACAGTGCTGTCTACCAGGTGGAATCCAATGTCACCCTTGAGAAGGTGTTCACATCTATCTCTAAG
Seq A exon
GTACGTAAGCAGGACAAAGACCACAGGAAGACTGCTCCATAGATGGGGAAATAGCATATGTGAGGAAGGTAAGTGTGGTTGTTTGAATAGGTATGGCCCCCCATAGATTCATGTGTTTAATGCTTGGTTAGAGGAGAGGAGCACTAATAGGAGGTGTGGCCTTACTGGAGATGGGCATGTGACCTTGTTAAAAGAAGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAAAGAACCAAAAAAAAAAAAAAAGAAGCATGTCACTGCATAGATGGGTTTTGGAGCAATATGTATCTGGCTGCCTCCAGCACCGTGTCTGCCTACACGCTGCCATGCTTCCCACCATGATGGTCTGAGCCTCTGCAACTGTAAGCCAGCCCCAAGTAAACATTTTTCTTTATAAGAGTTGCCTTGGTCAGGTGTCTCTTCACATCAGTAAAACCCTTAGACAGAAGTTGGTACCAGGGACCAGGTTATTCCTGTGATAGGCCTGACAGCGCTTTTGTCTGGAGGAATGTGGATTTTGGCACTTTGGAAAACAGTGGAATGAATGCTTTAAGTGGGGATTAATGGGCATCCTCGTAAAAGCATGAAAGACAGTGATGCTGAGGGGATTTGAACTCTGGGGACCTGGCTCGAGAGGTTTCAGAGGAGAAGAGTTCTAATATGTTACTTAGAGATCATTCTTGTGATGTTTGTGAATGTGGCTTCTTTTTGTCCTCATCTGAAGAGTCTTCCTAGGCTAAGGAGAAGAGATTTAGATTAATTGCATTGACAAAGGAAATCTCAAAACTGCCTAGTGTAGACTCTCCTGTGGTTCCTGTGGTTCACTCTTATGAAGAGTGTTTTGTTCAAGTGTAATAGCAAGCTTAGAAAAAAAAAAAGTATGATTCAAGGGTTAAAGGGGTACCAGAAAGTAGAATGTGGCTAATGTGTTCAAGGATATTAAATGGAATTAGGGGAGTGGTGACCTAGGCAAGGTCCTACCTAGTATCAAAGTAACCCGGGATGGACTGTTAACAGCGATTCTTGGTTGTCAACTTGACTATATCTGGAATGAACTGCAATCTAGAATTTATAAAGATCTTGTGTAAGGAATTAGGGAACGGTTAGGTCTAGGCAAGGTGGTAAATACCTTTAATCCCAGGAGCCAGAGGTAAGCAGGTCTCTGAGTTCGAGGTCAGTCTAATACAGAGCAAGATCCAAGTAAAGAAAAGCTCAGGTCCAGGTCTGATGCTACACACCTTTTATCCCAGCACTCGGGAGACAAGCATGCAGATCTCTGAGTTCAAAGCCCACCTACAGAGCAAGCTCCAGAACAGCCAAACTCAGGCGGTGAAGGAGTTGGAAAACAGAAAGCTGGTGATGATGTAATAGAATAAGGGGGCCATGTTCCAACTCCTGCAAGAAGCAGAACTTGGCAGCTTCAGCCATGTGGCTCTGGCTTTGAAATCAAGAATGGAAGGGACTACTGGGACAACTGATACTTGTTAGCCGGAGCTAAGAAATTATCAATGATTAAGAAGAGATCAGCTTCACTAGGGTGAAATCTTCTGGGAAACGTCTTCTGAGAGCACAAAGAAAGCTCTGTCCTAGAGGTAGACCTTGTCGCTGATGACCAGACTTGATGATAAGTGCGAGTCACCCACGTGGACTGGTTTTGAAGGCATGAAGGGGTCATGAAAGTGCAGCGGAAGAGCCCAGTCTGTCAGAGATGCCAGGACCAAAGGATGATCACCAAGAACAGCAGCAACAGTGGAGTGGAGACTGCCAGATCCTGGAGTGCTACCGAGGGCAGAGCTGGATGAGTGACCCAAGCAAGCCCTTTGGAGAGCCCAGAAGATCATATGTGGATCCCAGACGTTGGAATGAGAAGCTGTTAAGTTGAAGTTGCCTTGGAGACCCCAAGATGTTGCAGATGCCAGAGCCATGGGACACCTGCTGAGGAAAGCTGCTAACAGGGAGTCGAGCCAGCTCAGGAGAAAGAAGTGTGTTGTAGTCAACAAAGCTAAAAGGAATTGGACGTCAGACATGAAGGTTCAGAGTTTAGTTTACCCAGCTGGTTTCCAGTTTTGCTTTGGTCCAGTTTTTCCTCACTGTGCTCTCTTCCCTACATTTTGGAACAGTAATGTATGCCCTGTGCCATGATCTATTGAATGTATGTGATCTGTTTTTGATTTTGATTTTAATAGAGGATTACAGTAAAGAGATTGTGTGGATCTCAGAACATTGAATTTTGAACTTTTAAACATTGCTAAGACTGCGATAGACTGTAGGGACTTTTGGAGTTGGAATAAGTGCGTTTTGCATTATGTTAGAGCTATAGGCCTATGGGGTTCAGGGAGTGGACTGTGGTTGCTTGAATAGGTATGGCCCCCATAGATTTATGTGTTTGAATGTTTGACCTATGGGGAGTGGCACTAATAGGAGTTGTGGCCTTATTGGAGGTGTAACCATATTAGAGGAGGTATGGTGTGTGGTTTTGTTAGAGGAAGCATATCACTGTGGGTGGGCTTTGAGGTAATATATATGCTCAAGCTCTGCCTAGTGTAGTCCCCTTCTGGCTGTCTTTGGATCAAGATAAAGAACTTCCGGCTCCTCCAGCACCATGTCTGCCTGCATGATGACTTGCTTCTCACCATGATGATGATAATTGACCGAACCTCTGAAACTGTAAGACAGTCCCAATTAAATGTTGTCTTTATTAGAGTTACCTTCATCGTGATGTCTATTCATAGCAATAAAACCCTAAGGCAGTAAGGATAGGAAGGGGTGACTCTTCACACCTAGGTGGTCTCTTCTGTCTCTCTGTAGAGAAGGTTAGCCTCTTGGGATACCTTTCAGCCAGAATCTCTAAACTGTAACATGGACTAGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATCCATCTGTAATGAGATCTGATGCCCTTTTCTGGTGTGTCTGAAGAAAGCAACAGTGTACTCATGTAAAATAAATAAATAGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCGCATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAGTGTACTTACATATATGAAATAAATCTTTAATAAATAAATAAATAAATCCTTAAATGTAACACTTTTAAATTTTAATCCTTCTTAGCATCTACCTCCATTCCTCGTCCCTAAACACGCATGCATCATGTCTTTTTTTAACTTTTTCTTGCTCCGGCTTTTAATCAGTATGCATGTGGTTCTAGTGGCCTTTGTGTTTTTTGGGTTTTGCTTTGTTTTTGTTGTAACATATATGTGTTTTGCCTGCGTGTGTGTAATGTACCCCATGTGTGTGCCTGGTGCTGTTGGGGGACAGCAGAGGACATTCAGGTCTCCTGGAACCTGAGTACAGATGGTTGTGAAGTTCCACATGTTGTGTTGGGCGTTGAACTTGGTCCCTCTGCAAGAGCAACAAGTGTCTTAACCAATGAGCCATCTCTGCAAGCTGTTTGTGTTTTTGTGTGTGAGTGTGTGTTTGTGTGTCTGTGTGTGTGCGCTTGTGCGCATGAGGTAAATGGAAATAGAATTGATGGTGCTAAGTATAAAGTGCTAAGTAAGCTTAGTTGCTTTAGAATTGCCATTCCATTCGAACTGTATGGGAGTCCCCAAGACATACAGAGTTTGACACTGGGCAAATGTTTGACTTTATTAAACTAACTGATGTTTTAATTAAGTTAATTAGAATTAAATGGCATCGTTAAAATGATTTGGAGGTAAAACAGAGAAAGCACTTGAAGCCACTGTGGCTGTCATCCTTTGCCGCTCAACTAGAGAGGGTTTTACCGGGGAATTGTGGAGAAGGCGTGTTCTAACTCTGGCCATACATGTGCAG
Seq C2 exon
TATCCTGATGAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990:ENSRNOT00000080109:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(35.2=52.8)
A:
NA
C2:
PF0004624=Homeobox=PD(61.1=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]