GgaINT0000974 @ galGal3
Intron Retention
Gene
ENSGALG00000006184 | CERS5
Description
NA
Coordinates
chrE22C19W28_E50C23:250651-252955:+
Coord C1 exon
chrE22C19W28_E50C23:250651-250756
Coord A exon
chrE22C19W28_E50C23:250757-252824
Coord C2 exon
chrE22C19W28_E50C23:252825-252955
Length
2068 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTGTTTCATTTTCCTTCAGTCT
3' ss Score
8.5
Exon sequences
Seq C1 exon
GTTTATTGCCAAGCCATGTGCCATAAACCTTGGCATACAAGACAGTGGAGCTCACAGAGCCCAGCCTAATGCGATTTTAGAGAAAGTGTTTACATCCATCACTAAG
Seq A exon
GTGAGTTGCACTGCTAGGAACAGAGACCTACAAAGTTGAGCAGGTGGATTTCTGTCTCCCGCTTCTGTTTTGAGAAACGTGTTCCATCCACAGTGCACTCATCCGTGTGTTCTTTATTTTCCATTGCCTCTGACACGTCTGTCTTGTAGGAAGGTAAATTCTCTTAATGGCTGATGTGTGCTTTTGCACACAGAAGAATCTTTTTTGAATCAAAATTGTCTTCTTTCAAAATAAGAGTTTTCTTCCTTTAGTTCCCTGCTTTTGTCCCAGCTGCTACTGCTGTAATGGGCAGTAATTGTTGGTTTACAAAAAAATTGCTTGGCATCTTTCACTTCCTATTGGAAAAGCACTGCTCTGCTGTGATCTGCTCCTCTGCTTTCATTGGCCATCTGGGGGAATGCTTTCCTCTTCCTGTGCCAAGTGGAAGTCACTTGCTCAAGTAAAAGCATTCAGTCCATGGAAGTGCGCCCTGACAAGTGGTGGGATGCTGAATGTTGGCAGCAGATATTGCTTTTATTCTACATTTCATGGCTTTTCTCTTGCTTGAGCTGGCAGTGCTCCTTCACTTTAGATTGACAGAGCTGCATGCTGTCTGTGCTTTTGGATATTGACAGTTAAATCAGCACAGGTGGTGGGATAGATTTTCATTAAAGATATTGGAATGGAAGGTTTTATGTTCTCATTTGGTGATGCTGATCTCCATTTTGAGCAGAGTGGAAAAAGCACTTAGTGAATGGAGGGGAAATTATAAAAGCCTCAGCAGAATTTACCTCATGGGAACAGTGAAGTTCAGGAGTACTTGGGATGAGACATGAACAGGGAGGCCCCTGTGATTTGATGCCATTTGCGGGGAGGACTTTTATGCAGGGGATATCCTCGAAATTAATGTTGAGGAAACCCATGGTGTTGCATGCTGTGCAATACTTATCTAGCTTCTATGAAAACAGAGCTTCGTATAACTATGCCAGTATGCTTGTGTGCTGTCAGATTTGGAGACTGGAAATGTAGGGTGGCACTGATGCAGAGGGAAGAGATTTCATTGCTGTCTGCAATGGGAGCTGTGTGCACTCTCCTTTGGGGCAGGTTCGCCCTCAGATGTAGCAGCAGCCTGACCCTTTAAAGCCTGGAAAAGACAGAAGTCTGCTACGGGAAAGTCCTGGTTTCAGTACTGTAAATCAGATGACAGATTATCTTGTTTTTCAGTTCAACAATCTGGTGACTCTGTATTACATGAGCATTCTACATAGCTTTCTGGGTTTGTTTGTGACTTAAGTGGTAAAATGTGTTTATCATCATTCAGCTGTAAGAGCTCCCTGGCAGAGCTTGTTAAAAGGACACTGGTCTGAAACTAGCATGGCTTATCTCACCACTGAGCCATTGTAGAGGTAGTTACCAGGTTTTGTTCACTTTTTCTGCTCCTGTAAATCCAGTCGTTGTTCAAACAAGCAAACTGCTGGTAGAGTTTCCAGTGAGAGAACAGGGATGCATTCTTTATTGTGCAACTATTTCTGTTTTCAAGTTTAATTTTATTCATGCACTCTAAAAGTGGTAATGGAAATAATGCCATTTCTCTGATGCCTTTTTTGAATCTATAAACACCAGATGTGTTAAAACCAAATTCTTATTTTAAAGTTTCCATAAACCTCACAGTGAATACCATCCCTTCAGTGTATTCAGCTGTCATCTTCTTGAGTTCCAGACAGCCTGAGTTGATATGCAGGTTTTAACAGGTAGGACAGGGCATTTTAAAAGCTCCTCCTCCCGGACTAAGAAACAGAACTGCATTCTGCATAGTGATGTGCTGTCAAATGATGAAATAGATGAGGAAATGTTAAACCACAAGCATTCTGAGTACTTAATTAGTGGCTTTTGAAGGCTAAATATGAATGAATATGGCAACAGGTTCCTGCTTCTGGCACAGTCCTAGTGTTAGGGTTAATAGTGGACGTAGTGCCTTCATTGTGGGTTTTGTCATCTATGCATGGATCCTATTGTAGTGTACAGAGGATGTCAAACTGAAAGCAGGTTGAGAAGGAGGAGAACTTACGTTTGTTTCATTTTCCTTCAG
Seq C2 exon
TCTCCAGATGGAAAAAGGTTAGAAGGCTTGTCAAAGCAGCTAGACTGGGATGTTCGAAAGATCCAGCGCTGGTTTCGGCATCGGAGGAACCAGGACAAACCCACCACCATCACTAAATTTTGTGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184:ENSGALT00000009980:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(32.7=47.2)
A:
NA
C2:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]