RnoEX0020325 @ rn6
Exon Skipping
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141392873-141402564:-
Coord C1 exon
chr7:141402459-141402564
Coord A exon
chr7:141398347-141398477
Coord C2 exon
chr7:141392873-141392923
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTGGCCATACATGTGCAGTAT
3' ss Score
3.64
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
ATTTATTGCTAAACCCTGTGCACTCCGTATTGGCATTGAAGACAGTGCTGTCTACCAGGTGGAATCCAATGTCACCCTTGAGAAGGTGTTCACATCTATCTCTAAG
Seq A exon
TATCCTGATGAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCAT
Seq C2 exon
ATGCCTTGGCTCTGGGATACCCGACAGTGCTGGTACAACTATCCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(35.2=52.8)
A:
PF0004624=Homeobox=PD(61.1=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTGCTAAACCCTGTGCACTCC
R:
CTGATATGGATAGTTGTACCAGCACT
Band lengths:
154-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]