MmuEX0026166 @ mm9
Exon Skipping
Gene
ENSMUSG00000023021 | Lass5
Description
LAG1 homolog, ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99576320-99581772:-
Coord C1 exon
chr15:99581667-99581772
Coord A exon
chr15:99577468-99577598
Coord C2 exon
chr15:99576320-99576377
Length
131 bp
Sequences
Splice sites
3' ss Seq
CTCTGGTCATACATGTGCAGTAT
3' ss Score
3.76
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
ATTTATTGCCAAGCCCTGTGCACTCCGTGTTGGCATTAAAGACAGTCCTGTCAATAAGGTGGAACCCAATGACACCCTTGAGAAGGTGTTCGTATCTGTTACTAAG
Seq A exon
TATCCTGATGAGAAAAGGTTGAAGGGCCTATCAAAGCAACTGGACTGGAGTGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGGAATCAGGACAAGCCTCCAACGCTCACGAAATTCTGTGAAAGCAT
Seq C2 exon
GTGGAGATTCACTTATTATTTATGTATCTTCTGCTACGGAATCAGATTTCTCTGGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021_MULTIEX1-1/5=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(30.0=41.7)
A:
PF0004624=Homeobox=PD(66.0=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
C2:
PF0379811=TRAM_LAG1_CLN8=PU(18.1=95.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATTGCCAAGCCCTGTGCA
R:
CGACCAGAGAAATCTGATTCCGT
Band lengths:
163-294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: