GgaEX1014934 @ galGal4
Exon Skipping
Gene
ENSGALG00000006184 | CERS5
Description
ceramide synthase 5 [Source:HGNC Symbol;Acc:HGNC:23749]
Coordinates
chrLGE22C19W28_E50C23:274087-277395:+
Coord C1 exon
chrLGE22C19W28_E50C23:274087-274192
Coord A exon
chrLGE22C19W28_E50C23:276261-276391
Coord C2 exon
chrLGE22C19W28_E50C23:277338-277395
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTCATTTTCCTTCAGTCT
3' ss Score
8.5
5' ss Seq
CATGTATGT
5' ss Score
5.71
Exon sequences
Seq C1 exon
GTTTATTGCCAAGCCATGTGCCATAAACCTTGGCATACAAGACAGTGGAGCTCACAGAGCCCAGCCTAATGCGATTTTAGAGAAAGTGTTTACATCCATCACTAAG
Seq A exon
TCTCCAGATGGAAAAAGGTTAGAAGGCTTGTCAAAGCAGCTAGACTGGGATGTTCGAAAGATCCAGCGCTGGTTTCGGCATCGGAGGAACCAGGACAAACCCACCACCATCACTAAATTTTGTGAGAGCAT
Seq C2 exon
GTGGAGATTTACGTTCTATTTAAGTATATTTCTTTATGGAATCAGGTTTCTCTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006184-'5-7,'5-4,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(32.7=47.2)
A:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGCCAAGCCATGTGCCA
R:
CGTCCAGAGAAACCTGATTCCA
Band lengths:
162-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]