DreEX0021073 @ danRer10
Exon Skipping
Gene
ENSDARG00000002365 | cers5
Description
ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
Coordinates
chr22:5741493-5747350:-
Coord C1 exon
chr22:5747245-5747350
Coord A exon
chr22:5743517-5743647
Coord C2 exon
chr22:5741493-5741550
Length
131 bp
Sequences
Splice sites
3' ss Seq
TATTTCTGTGTTTGTTTCAGTCT
3' ss Score
9.52
5' ss Seq
CATGTAGGT
5' ss Score
4.94
Exon sequences
Seq C1 exon
GTTTATCGCAGGTCCGTGTGCCTCCATGCTTCAGATCCAGACGGAGTTGAGTAGGAGAGCTCAGCCCAACGCCGTCCTGGAGAAAGTGTTTACATCCATCACAAAG
Seq A exon
TCTCCAGACTCCAGGCATTCAGAAGGCCTGTCTAAACAGCTGGACTGGGATGTGCGAAAAGTCCAGCGATGGTTTCGACACAGAAGAAACCAAGACAAACCCAGCACAAGAACCAAATTCTGCGAGAGCAT
Seq C2 exon
GTGGAGGTTTACATTCTATCTGTCTATATTTACGTATGGGATGCGTTTTCTGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002365-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(31.4=44.4)
A:
PF0004624=Homeobox=PD(64.7=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTATCGCAGGTCCGTGTGC
R:
GCCACAGAAAACGCATCCCAT
Band lengths:
162-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]