MmuINT0091051 @ mm10
Intron Retention
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99802111-99806571:-
Coord C1 exon
chr15:99806423-99806571
Coord A exon
chr15:99802213-99806422
Coord C2 exon
chr15:99802111-99802212
Length
4210 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GGTTATTTTTTATTTTGTAGAAT
3' ss Score
7.96
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACA
Seq A exon
GTAGGTGTCCTGCACCAATGCACCGTCCTTATTCATTCCTCCAGCCAGCCCACAGAACTTGCAGCTAGGAAATGCCTGGGGGGGGGGGGGGCTGACCTCTGACACACTTCTCATAAGCCCCACCCCTCTGCCATAGCCATTTTCTGGTCTTGATTCTGCTCTGCCAGCTCATGCACATTCGGACCTGGCTCATTTTCCGTGATGTCACCCACTGTGATATCAAGATGAGCCTCTCCTGGCTCATCTGCTGGGCTTTGTCATTGTTGCCGAGGAAGGAACGCTATTTCATTAGCTTTTTGTTTTGGTTTTTTTTCTTTTTCTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTATAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCAGCTCATTAGCTTTAATAGGAACATCTATTATGAGCCTTCCTTTTGGTTTTGTGGTGGGTGCTCAGGCCTTTGCATATGCTAGGCCAGCATGCTGCATTGGGCTATATCTTCATCTCACTTCCCTTTTCAAGAGCATCATAGGAAATATGAAAACCAGTAAGTGCATTGAGCATTGATGTGGAGTATTTTTAAGTTTTTCACTGAAATATTGTTCATGTAATATAAAATCACCATTTTATTGGAAGCACGGGCTAGCTAAGGATGCATCTCAGAGGTAGAGCCTTTGCCTAGCTTGCTTGAGGCCCTGGGTCTGATTCCTAGCTCCACAGGGGGGAAAAAAATCCAAGTCCACACTTTGGAGATTTAAAGTATATTCATAAGGTTGTACAACTATCACTGCTTTCTTAAGTCCAGAACCTTTCTGACATCCCCCAAAGCAATTCCTTATCCGTCAGTCACCCACTAATTTGCTTCCTGCCTTCCTGGACCGGCACAGCCTAAGCATTTCATGTGAAGATTCTGTGCGAGCCGGGACTGTGGCTCCGTGGTGCGGCATTGGCCTAGCATGCCTGAGGCTCAGGATTTCATTCCCAACATAAGGGAGTTCTATGTGGTCTACTCAGTCTTTATTCCTTATGATGTCATGCTTTCCTGCAGAGGAAGAACGGTGTGTTAGCAAGAGGGGACTGGGACTGACTGGAAGATGGCATCCTTGATGAGTGGAAAGTTCAGTATTCCACGTCTCCCAACCCCGTAACGCCAAGAATCAAAGCACATATATGTAAACGCTCTTCTACTCGGTCACACCCCGGCCCCCAACCCTGTCATCCTTGTCTGCTGTCTTGGAACTCACTCTTGTAGACCAGGCTGATCTGGAACTGGGAGATCTGCCTGCCTCTGCCTCCAGAGTGGTGGGATTAAAGGTTAAGACATGATTTTACTCTGTGACCCAGTCAGTCTAGTCTCGCCTTAAATACACAGAGCTCTTCTTGCCTCAGCTTCCCTCCCTCCCTCCTTCCCAAGTACTGAAATGACTGAAGCACATCCTTGTCTGTCTTCTTTTTTTTTTTTTTAAGATTTATTTATTCTATATATGTGAATACATTGTGGTTCTCCTAGGACACACCAGAAGAGGGCATCGGATCCTATTACAAATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAACTTCTAGCCCAACTTCTTATTTATTTATTTATTTATTTATTTATCATATAAGTACATTGTAGCTGTCTTCAGACGCACCAGAAGAGGGAGTCAGATCTCACTACAGATGGTTGTGAGCCACCAGGTGGTTGCTGGGATTTGAACTCAGCACCTTCAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCTGTCTCTCCGGCACCCCCTGCCCCCAACTTCTCATTTTTAAAGGATACATATGTTTATTCCTTCTGTGATTTCAGAACATAATATCTATTAATGGCCAAAGGTCTTAACAAAGCCAGAAGAATACTGAGTTTTATTTGTTCCTGGACAGATACAAGTTCATAATGCATATTCCAGAAATTAGAACTTTTCTCCCCACAGTAGTACCGAAGGACTAATTCTCCGAGGATTTTTCTTTCTTTTTCTTTCGTGATTGATTAAAATCACGGCTTCACACCTCCTAGACGAGAACACACCCTCCTCCCTTACTCCGGTTCTTCTCAGTAGCTTTAGTGAGAGACGGTATGTGTGCGCGGATACAGAGAAACCCCATGGTTTCCTGAGTATGAGAAGTGAGTGGAGTTAGGCTTCCCTTAGAACATAGATCCAGAGATGCGGAGCTTTGCTTCCTGCCTCTTACTGGAGGTGTCTGTCTGTGCCTTCCTACTGCAAACAAAAATTCCAGGTGACTCCTCTGGTAGGAGAACCCGTTCAGTGACCTTGGTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGGCATTTTGTACACTGGAAGGAGCAGCAGGCCTGACGGTAGCAAAGCATCCTCCCGATGACCTGGCCGGGGTTTCGTTCATTTTTAAATGGTCTGCTTTATCCCAGGCTGACCTCAAACTGCCTGTGTAGCCAAGCCTGGGTTTTGAACTCCAGATCCTCCTGCCTCCAGCTCCCAGCTCTCAGCTTGTGAGACCACACCTGGTTTTATGGGTGCTGGGGATGGAACCCGGGGCTTTATATATGCCAGGCAAGGCAAGCTCTCTACCAGCTAAGCTATACATCCTTAGCTCCCCCTTAAAATGGAACAAAACCTCAAGGGTGTAGCAGTGTAGATGGATGATCATTTGAAGTCATTTCCCGGGCAGCCATGCTGCAGAGATCTTATCTCTAAATAAGTACTCCCGGGAGGGTTGAGAAATCTTTGGAAATTCTTGTGAAAAGTACGTTTTATCTCATCCTCAAAGAATGTCTCTAATTCCTCACAGGACACAACTGTCCTCAGCAGCAGCTTAGAGGGGAGCTCAGAGTCAGGCAGGCAGGCAGGCAGGCAGGCAGACAGACAGTAAGTTAGTGCAGTCCGGCAGCCTGCAGTCTTTCTAATAGGCACCCTTCCAGAGCAGAGACTGCCCACTCTGGAGTAGCTGACTGTAGCAATCTCACCCCGCCCACTTTGGTTAACCCTGCGGCTTTACATGGCTTCCTTCCTCCTGAGCCTAAAGACTCAGAGAGAGGGTCTGGAAATGTAGCCCAGTCAGTGTAGCCTAGTGCACAGTCTTAATTTTAACCACCAGGGCCACATCAAAGAAACTAAATGCAGTGACGCTCTAGCGCTTGAGAGGTGTAGCCAGGGGGATCAAAAATTCAGAGTTGCGCTAGCTTCAGCAGCACATATACTAAAATTGGAATGATACAGAGAAGATTAGCCTGGCCCCTGCGCAAGGATGACACCAAATTTGCAGAGTTATCCTTGGCTATATAGTAAGTCTGAGGCCAGCACGAACTACGTGAGAGCCTGTCAGAAAGAGAAAAGGGACGTGGGGGCACAGTAGAGGTAGGACAAGTCCATCTTCATCTCCCCCTTGGTTGATTTTATTTTGAATTAGTAAATTAGTTCACATCCTACTCCGAGTTCTCACTGCAGCACAAATACATGGGGTTTGGTTTATTTTTTTAATGTTGAGGTTCTGTTATGAAATACTGGTCAAAGTGTGTTTTTATGAATCTTATGAGAAAAACTTGCTTCCGAAAGCTCCGTAGAAAAAGAGTGTTTATGGTATCACTTGGTGTAATTGCAGTTTTTTATATGTATCCATCATCCCTGTCTTTCTTTCCAGGCCGGGCATTTGTATCTATGGTCAGTATATTTTCTTAATTATTGGCACTTGGCATCCTCTCTCTCTGCTCCAGAATGGTCTTTTCTGGATAACACTCACAGGCTTTTGCACTTTCACAAGCTGTGCTGCTAGAAGAGAGAATCACGAGAATGTGGTGTGTGCTGGGGGCGGCCGGGGGTGGGGGGTCCATCCACGTGGGTGTGTCTGTCTTCTGATGAGCATCCAGTTTGAGACAGGCACAGAGATATTTAACTCCGAGGTATGCGTCCGCACGGCTGCTTTGGTCGTTTCACTGGTCAGCGGGTTTGCTTGTGACGGGGGTTTGATTTGACCCGAGTTCTAGGAAGAAGAATGCGTTCTTTTAACGTGCCACGTCTGTCTGAAGGATGGCTGTGCAGAGACTGGGATGGTAGGCGTTTTGAGTTGACGGGTTATTTTTTATTTTGTAG
Seq C2 exon
AATGAGCTGAAAACCAGTGAAAGCAAAACTCATAAATGGGAACAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGCAGCGTCCATCAGGAAGGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022:ENSMUST00000073691:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types