MmuINT0091051 @ mm9
Intron Retention
Gene
ENSMUSG00000023022 | Lima1
Description
LIM domain and actin binding 1 [Source:MGI Symbol;Acc:MGI:1920992]
Coordinates
chr15:99632542-99637002:-
Coord C1 exon
chr15:99636854-99637002
Coord A exon
chr15:99632644-99636853
Coord C2 exon
chr15:99632542-99632643
Length
4210 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
GGTTATTTTTTATTTTGTAGAAT
3' ss Score
7.96
Exon sequences
Seq C1 exon
GTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACA
Seq A exon
GTAGGTGTCCTGCACCAATGCACCGTCCTTATTCATTCCTCCAGCCAGCCCACAGAACTTGCAGCTAGGAAATGCCTGGGGGGGGGGGGGGCTGACCTCTGACACACTTCTCATAAGCCCCACCCCTCTGCCATAGCCATTTTCTGGTCTTGATTCTGCTCTGCCAGCTCATGCACATTCGGACCTGGCTCATTTTCCGTGATGTCACCCACTGTGATATCAAGATGAGCCTCTCCTGGCTCATCTGCTGGGCTTTGTCATTGTTGCCGAGGAAGGAACGCTATTTCATTAGCTTTTTGTTTTGGTTTTTTTTCTTTTTCTTTTGGTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTATAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTTCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACTGCCCAGCTCATTAGCTTTAATAGGAACATCTATTATGAGCCTTCCTTTTGGTTTTGTGGTGGGTGCTCAGGCCTTTGCATATGCTAGGCCAGCATGCTGCATTGGGCTATATCTTCATCTCACTTCCCTTTTCAAGAGCATCATAGGAAATATGAAAACCAGTAAGTGCATTGAGCATTGATGTGGAGTATTTTTAAGTTTTTCACTGAAATATTGTTCATGTAATATAAAATCACCATTTTATTGGAAGCACGGGCTAGCTAAGGATGCATCTCAGAGGTAGAGCCTTTGCCTAGCTTGCTTGAGGCCCTGGGTCTGATTCCTAGCTCCACAGGGGGGAAAAAAATCCAAGTCCACACTTTGGAGATTTAAAGTATATTCATAAGGTTGTACAACTATCACTGCTTTCTTAAGTCCAGAACCTTTCTGACATCCCCCAAAGCAATTCCTTATCCGTCAGTCACCCACTAATTTGCTTCCTGCCTTCCTGGACCGGCACAGCCTAAGCATTTCATGTGAAGATTCTGTGCGAGCCGGGACTGTGGCTCCGTGGTGCGGCATTGGCCTAGCATGCCTGAGGCTCAGGATTTCATTCCCAACATAAGGGAGTTCTATGTGGTCTACTCAGTCTTTATTCCTTATGATGTCATGCTTTCCTGCAGAGGAAGAACGGTGTGTTAGCAAGAGGGGACTGGGACTGACTGGAAGATGGCATCCTTGATGAGTGGAAAGTTCAGTATTCCACGTCTCCCAACCCCGTAACGCCAAGAATCAAAGCACATATATGTAAACGCTCTTCTACTCGGTCACACCCCGGCCCCCAACCCTGTCATCCTTGTCTGCTGTCTTGGAACTCACTCTTGTAGACCAGGCTGATCTGGAACTGGGAGATCTGCCTGCCTCTGCCTCCAGAGTGGTGGGATTAAAGGTTAAGACATGATTTTACTCTGTGACCCAGTCAGTCTAGTCTCGCCTTAAATACACAGAGCTCTTCTTGCCTCAGCTTCCCTCCCTCCCTCCTTCCCAAGTACTGAAATGACTGAAGCACATCCTTGTCTGTCTTCTTTTTTTTTTTTTTAAGATTTATTTATTCTATATATGTGAATACATTGTGGTTCTCCTAGGACACACCAGAAGAGGGCATCGGATCCTATTACAAATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTAAACTCAACTTCTAGCCCAACTTCTTATTTATTTATTTATTTATTTATTTATCATATAAGTACATTGTAGCTGTCTTCAGACGCACCAGAAGAGGGAGTCAGATCTCACTACAGATGGTTGTGAGCCACCAGGTGGTTGCTGGGATTTGAACTCAGCACCTTCAGAAGAGCAGTCAGTGCTCTTAACCACTGAGCTGTCTCTCCGGCACCCCCTGCCCCCAACTTCTCATTTTTAAAGGATACATATGTTTATTCCTTCTGTGATTTCAGAACATAATATCTATTAATGGCCAAAGGTCTTAACAAAGCCAGAAGAATACTGAGTTTTATTTGTTCCTGGACAGATACAAGTTCATAATGCATATTCCAGAAATTAGAACTTTTCTCCCCACAGTAGTACCGAAGGACTAATTCTCCGAGGATTTTTCTTTCTTTTTCTTTCGTGATTGATTAAAATCACGGCTTCACACCTCCTAGACGAGAACACACCCTCCTCCCTTACTCCGGTTCTTCTCAGTAGCTTTAGTGAGAGACGGTATGTGTGCGCGGATACAGAGAAACCCCATGGTTTCCTGAGTATGAGAAGTGAGTGGAGTTAGGCTTCCCTTAGAACATAGATCCAGAGATGCGGAGCTTTGCTTCCTGCCTCTTACTGGAGGTGTCTGTCTGTGCCTTCCTACTGCAAACAAAAATTCCAGGTGACTCCTCTGGTAGGAGAACCCGTTCAGTGACCTTGGTTTTTTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTGGCATTTTGTACACTGGAAGGAGCAGCAGGCCTGACGGTAGCAAAGCATCCTCCCGATGACCTGGCCGGGGTTTCGTTCATTTTTAAATGGTCTGCTTTATCCCAGGCTGACCTCAAACTGCCTGTGTAGCCAAGCCTGGGTTTTGAACTCCAGATCCTCCTGCCTCCAGCTCCCAGCTCTCAGCTTGTGAGACCACACCTGGTTTTATGGGTGCTGGGGATGGAACCCGGGGCTTTATATATGCCAGGCAAGGCAAGCTCTCTACCAGCTAAGCTATACATCCTTAGCTCCCCCTTAAAATGGAACAAAACCTCAAGGGTGTAGCAGTGTAGATGGATGATCATTTGAAGTCATTTCCCGGGCAGCCATGCTGCAGAGATCTTATCTCTAAATAAGTACTCCCGGGAGGGTTGAGAAATCTTTGGAAATTCTTGTGAAAAGTACGTTTTATCTCATCCTCAAAGAATGTCTCTAATTCCTCACAGGACACAACTGTCCTCAGCAGCAGCTTAGAGGGGAGCTCAGAGTCAGGCAGGCAGGCAGGCAGGCAGGCAGACAGACAGTAAGTTAGTGCAGTCCGGCAGCCTGCAGTCTTTCTAATAGGCACCCTTCCAGAGCAGAGACTGCCCACTCTGGAGTAGCTGACTGTAGCAATCTCACCCCGCCCACTTTGGTTAACCCTGCGGCTTTACATGGCTTCCTTCCTCCTGAGCCTAAAGACTCAGAGAGAGGGTCTGGAAATGTAGCCCAGTCAGTGTAGCCTAGTGCACAGTCTTAATTTTAACCACCAGGGCCACATCAAAGAAACTAAATGCAGTGACGCTCTAGCGCTTGAGAGGTGTAGCCAGGGGGATCAAAAATTCAGAGTTGCGCTAGCTTCAGCAGCACATATACTAAAATTGGAATGATACAGAGAAGATTAGCCTGGCCCCTGCGCAAGGATGACACCAAATTTGCAGAGTTATCCTTGGCTATATAGTAAGTCTGAGGCCAGCACGAACTACGTGAGAGCCTGTCAGAAAGAGAAAAGGGACGTGGGGGCACAGTAGAGGTAGGACAAGTCCATCTTCATCTCCCCCTTGGTTGATTTTATTTTGAATTAGTAAATTAGTTCACATCCTACTCCGAGTTCTCACTGCAGCACAAATACATGGGGTTTGGTTTATTTTTTTAATGTTGAGGTTCTGTTATGAAATACTGGTCAAAGTGTGTTTTTATGAATCTTATGAGAAAAACTTGCTTCCGAAAGCTCCGTAGAAAAAGAGTGTTTATGGTATCACTTGGTGTAATTGCAGTTTTTTATATGTATCCATCATCCCTGTCTTTCTTTCCAGGCCGGGCATTTGTATCTATGGTCAGTATATTTTCTTAATTATTGGCACTTGGCATCCTCTCTCTCTGCTCCAGAATGGTCTTTTCTGGATAACACTCACAGGCTTTTGCACTTTCACAAGCTGTGCTGCTAGAAGAGAGAATCACGAGAATGTGGTGTGTGCTGGGGGCGGCCGGGGGTGGGGGGTCCATCCACGTGGGTGTGTCTGTCTTCTGATGAGCATCCAGTTTGAGACAGGCACAGAGATATTTAACTCCGAGGTATGCGTCCGCACGGCTGCTTTGGTCGTTTCACTGGTCAGCGGGTTTGCTTGTGACGGGGGTTTGATTTGACCCGAGTTCTAGGAAGAAGAATGCGTTCTTTTAACGTGCCACGTCTGTCTGAAGGATGGCTGTGCAGAGACTGGGATGGTAGGCGTTTTGAGTTGACGGGTTATTTTTTATTTTGTAG
Seq C2 exon
AATGAGCTGAAAACCAGTGAAAGCAAAACTCATAAATGGGAACAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGCAGCGTCCATCAGGAAGGAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023022-Lima1:NM_023063:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: