MmuINT0093488 @ mm9
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32808884-32809806:-
Coord C1 exon
chr2:32809722-32809806
Coord A exon
chr2:32809006-32809721
Coord C2 exon
chr2:32808884-32809005
Length
716 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TGCCATCTGGGTCTCTGCAGACA
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTATTGAATGTGGAAAGAAATCAACTCACGCATCTCCCTCGCTCTATTGGGAACCTGCTGCAGCTCCAGACGCTCAATGTAAAAG
Seq A exon
GTGGGGACACAAAGCCCTGTCGCGCCATCCTCAGGCAACTCCAGAGTCAGGCCACTGAGTGTGAGGGCAACGCTGCAGGCCAGACTGACCTCCCGCTAGATCCCTCTGTCTCCATGGCAACCAGAGGCAATATATCTGTAAAGAGTTCCATGACCCTCAGAATCAGAGACTTGTGGGGCAGAAGACAGGCCAATGTAGTGACGGGTAAGCTAAGTGACGGGAACAGGGTGTAGTGATGAGCAAGACAGAAGGAGGTGCTGCTGTAGCCACTCCTTGTGGCTCGGGACACTCCGACTGATGCTGGCCCCACGACTGTGGCTGGCCTGACAAGTCCTCAAGGCAGGCAGAGGATGGGGCATGCCCAGCTAACATGAGGAAAGTGAGGCTCAGAGCAGTAGCTTGCACAGGACTCCCACCCTGCAGTGAGGTAAGTGACTAGCCAGGTGCCAGGGTAGTGTTTTCATCCTCCAAAGAGGACTGGCCTCCCCGTGGTCCAAGCTCTTCATCGTTCTCTTGCTGCCCCTGGCCTCTGCACAGTGTCAGCTCATCCTGTGACTGATGGGAGACAGTGGTGCTGTATTACAGAGACGAGGCCCCGGGAGGGAAGGCCAGGTGTCCTGAGCTGCTCGGCTAATAAGCAGTGACAGCCTCCCGGCCACATTCCCTGGGCGGCCGGAGGCTCTGGGGCACTGAGTTTGCCATCTGGGTCTCTGCAG
Seq C2 exon
ACAACAAGCTGAAGGAGCTTCCTGACACCCTGGGGGAGCTGCGGAGCCTGCGGACACTCGACATTAGTGAGAACGAGATTCAGAGACTTCCCCAGATGCTGGCGCACGTGCGGACCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-Lrsam1:NM_199302:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(37.8=58.6),PF127992=LRR_4=PU(18.2=27.6)
A:
NA
C2:
PF127992=LRR_4=PD(79.5=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAAGAAATCAACTCACGCA
R:
CTCCAGGGTCCGCACGTG
Band lengths:
198-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: