MmuINT0094771 @ mm10
Intron Retention
Gene
ENSMUSG00000036646 | Man1b1
Description
mannosidase, alpha, class 1B, member 1 [Source:MGI Symbol;Acc:MGI:2684954]
Coordinates
chr2:25345406-25348226:+
Coord C1 exon
chr2:25345406-25345594
Coord A exon
chr2:25345595-25348035
Coord C2 exon
chr2:25348036-25348226
Length
2441 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
TTTCCCCTTGTCTGCCACAGGAG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GAAGATTTTGGAAAACGGCTGATGCCTGCCTTCACTACGCCCTCCAAGATCCCATACTCTGATGTGAACATTGGCACTGGATTTGCCCACTCACCCCAGTGGACTTCAGACAGCACGGTGGCAGAAGTGACGAGCATTCAGTTGGAGTTCCGGGAGCTCTCTCGTCTTACTGGAATAAAGAAATTCCAG
Seq A exon
GTAGGGGCTAGAGGTTAAGAGCACTTGCTGCTCTTATGAGATGAGCCAGGCTCAGTACCCAGAAACTACGTGATGGCTCACAACCCTCTATTTTGTGCTTTTGTTGTTGTTGTTTATTGGATTTGAGGCAGAGTTTCATTATATCGCACTAGCTGGACTAAAACTCAATACATAGACCATAGAAATCCACCTGTCTGCCTCCAGAGTACTGGAATTACAGTGTTACCCACCACACACAGTTGTCTTACAACTTCTGTAACTCCAGTTCCAGGAGGTCTAACACCCTCTTCTGGCCTCCATATGAACTAGGCATGCATGTGGTACACATACATGTAGACAAACACTCATACACATAAAACAAGAATAAAATCTCAGAAAGGAAAAACAAAAAAGAACAATTTCAGGTAAGAAGGGCAGGTTCTAGCTAGAAATGGTTTCCCTGGGTCTGAGTGCTTCTCATGAGGATAATTGCGATACTGTTTTGCTGTGTGAATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTATAGACCAGGCTGGCCTTGAAGTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACCGCCCGGCTTTTTTTTTTTTTTAATTAAACATTTTAAAATTACTTGTGTGGGGCTGTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTTAGGGGACAACTAAGGTGGACTCTGTCCTGTCTCTCTACCTTTATATAACTGGGCTCAGGGATCAACTGCAGATCTCTAGGTTGCATGGCAAATGCCTCCACCTGCTGGGCCACCTGATTGTTCCTTACTGATTTTTAATATGTCTGTTATATACAACCATCTATTAATAGCCTTCCTCGTCTTGTGCAGTGCAAACTTGGGCCAGTTAAAAACTCTGCTTCTAGTCTCAGCCCCTGACAGCTCCAGGCTTCTGTCTCTGGGAAGGGGTATGTACAAGGGACTCATGTGAGTAGAGGCCATATTCTGCCATCTCCTGGTGGCATCTTACACTCAGCCTCCTCTCTCCTGCTGCAGTTGTTGGGGTTCCTATTTTTCCCTGCTATAATCAGCCCTCACATGGGTGACTTCACTGTGGTCTGGCTGCTGTGCTGCTGATGTACACATTTGGTTGCTTCTAGGTCTTAGCTCTCTGAGGGACGTTGCTCTGCATGTGGCATACAGAGAGGTGTTTGAGATGCACTTTGAATCCTTGAACTCCTTCACTTGAACTGGACCTGCTGGGTCCCATGGTAATTCTGTGCTTACGGTTTGAGAGGAGCAGCATAATGCTTCCCACTGGGACAGCGCCGTTTTACTTTCCCATCAGTGATCACAAGACCCCAGTTTCTCTACCTCCTCAACAGCACACTTGTGTTTGATCAGACTGTCTGTGAACGGAAGTGTGGCTGGAGTGAGGCAGCAGCTCATTGTGATTTGACCTGTATTTCTCAGTGTTCCCGATGATGAACATCTTCCCCTGTGCTTATGTTACTGCTCTGGAGAAAGATCTATGTGAGTTCTTTTTGTTAGGTTCTGGAATTAAACTCCGGGCCCTGCCCACCTTTGCTCCACGCCCCCAGCATTGAAGCTGTCCCAGCATTGCCTCTTAACCCACTTTGCTTTTTGTAGTTTTGTAAGGATAGTAAGTCTTCCAACTTTATCTGCTCTAATGGGAGCAATTGATTTCTAAATACTTCATTTTGTTCTTTATCGGTGACTTTCTCACACACAGCTTTTGTTATGTGGAGATGGTCCCCCTTTTTTGGGTTATTTGGTCTTTTTGTGGTGTTAAAGATTGGCAAATCTAAGGCCCCATGCATACTAGTTACCACCAAGCCACAGTCAGACCTGAAGTTGGTCCTTTTTGTTTCTCATTGGTTGAGTGTGGTGGTGGTGTTGAATATTTTTATCAGGAAAGGGGAAGAATCTGTTTCCTTCCAATGATTCTGGGGTTTTTGTTTGTTCATTTGTTTGTATGTTTCTCTAAGACAGGGACTTAGTCTGTGGCCTGGGCTGTTATTCGTTGGTTGATCTGATACTGTTTAACCAGTTGCGATGCTCATTCTGTGGATATGTGTGATGTTTAGTGATTTTCACGTGCTGAACATCATTGCATTTTGAGTCATGAGGCAGACAGCTTCACATACTGCTGACTTGCCTTGCTAGCATGACGGGGAGGATCCCTGCATCCATTTGGTAAAGAAACTGGTTTAGCGTCCTTCCTGTGGGTGCTCTCCTGTGGCTTTGGCGCTAGGATATTGCTGGCTTCATGGGACAGGTCAGAATGTGTTCCCTTCCATTTGCTGAAGTTTGAGAAGAATTGACTGGAGTAAGCCCACTTTCCCCTTGTCTGCCACAG
Seq C2 exon
GAGGCCGTGGAGGAAGTGACAAAGCACATCCACTCCCTGTCTGGGAAGAAAGACGGGCTGGTGCCTATGTTCATCAACACGAACAGCGGCCTCTTCACCCACCCAGGAGTGTTCACCTTGGGGGCCAGGGCTGACAGCTACTACGAATACCTGCTGAAACAGTGGATCCAGGGTGGCAAGAAGGAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036646:ENSMUST00000042390:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0153215=Glyco_hydro_47=FE(14.1=100)
A:
NA
C2:
PF0153215=Glyco_hydro_47=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types