MmuINT0097392 @ mm10
Intron Retention
Gene
ENSMUSG00000013833 | Med16
Description
mediator complex subunit 16 [Source:MGI Symbol;Acc:MGI:2158394]
Coordinates
chr10:79895627-79896564:-
Coord C1 exon
chr10:79896348-79896564
Coord A exon
chr10:79895711-79896347
Coord C2 exon
chr10:79895627-79895710
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CGCTCCCCTCTCATCCCCAGGGC
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCCGTGATGAGGGCGCAGCCAGTGAACCAGATGAGGGTTTGGTGGATGAATGCTGCCTGCTGCCTAGCCAGCTGCTGGTCCCCAACTTGGACTGGCTTCCCGCCAGTGATGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCCTGCGCCTGCGCTTCGGCAGAGCGCCCACTCTGCCCAGCAGCACCTCCACCCTGCAGCTGGACGGCCTCACCAG
Seq A exon
GTATGCACTGCCCCTCCCCACTGCCCATCCACCCCCTCTCCCTCCCCCACCCCCCGCCTCTGAAGGCCTCCACACCACAGCTTTGCTTCAGGGTTCTCTCCCACAGAGGCTCCAGCGCCTTCTAGAACATCGTGTCTCCAATGGTCAGGTCCTTGCAGTGAGATGAGAACTTGCCATTCTAGCCTTTGCTGTGTGCGTAGAGATGGGGTTTGTGGTTTTCCGACCAAGGGTACCTCTGGCAGTCCTGGCACTAACTCTGTAGCCCAGGCTGGCTTCCCACCAGCCTCCACCTCTGAGCCCACAACACTGCGTGGAGAATTCATTTTCTTCACCCATTTGGATTTGCTGAAGCTGTAATGGAGCCCTTGCCTGTCCCAAGCCATCGTTTGCTGATAAGGGACTGCCGTGCCCCTCCAACAGCGAAACCATTACCCCCTCCTGTGTGTATACTGTCCCATCAGTCACATTTGGAAGGTTCTAGAAGAAACACTGGCCCTATCTCACCAGGAAAAGGCCATTGGCTGTTTGTTATGGTTGAGCCCCAGGGTGACACACCAGAAGCTACCCTCTGCCTCCTGCCTGACAGGGCACTGTGGACATAGGTCCCACATCCCCCTCGCTCCCCTCTCATCCCCAG
Seq C2 exon
GGCCCCTGGCCAGCCCAAGATCGACCACCTCCGGAGGCTACACCTGGGCGCCTACCCCACCGAGGAGTGCAAAGCCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013833:ENSMUST00000105378:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.055 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(10.1=100)
A:
NA
C2:
PF116353=Med16=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCAGTGAACCAGATGAG
R:
CAGGCTTTGCACTCCTCGG
Band lengths:
281-918
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types