RnoINT0091114 @ rn6
Intron Retention
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12630636-12631608:+
Coord C1 exon
chr7:12630636-12630852
Coord A exon
chr7:12630853-12631524
Coord C2 exon
chr7:12631525-12631608
Length
672 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
CCCTCCCCTCTCATCCCCAGGGC
3' ss Score
11.49
Exon sequences
Seq C1 exon
GCCGTGACGAAGGCCCAGCCAGTGAGCCCGATGAGGGCTTGGTGGACGAATGCTGCCTGCTGCCCAGCCAGCTGCTGGTCCCCAGCCTGGACTGGCTTCCTGCCAGTGACGGCCTGGTCAGTCGCCTGCAGCCCAAACAGCCCTTGCGCCTGCGCTTCGGCAGGGCACCCACCCTGCCCAGCAGCACCTCCATCCTGCAGCTGGACGGCCTCACCAG
Seq A exon
GTATGCACTGCCCACTCATCCTTCCTCATCCCCCGCACGCACGTGCTGCCCCGCCTCCCTCACCCCCCCCGCCCCGCACGTGCCGCCCCGCCCCGGAAGGTCTCCACACCACAGCTTCCCTTGAGGCTCTCTCCTACAGAGACTCCTGCAACTTCTAGGGCCTGGTGTCTCCCCTAACCACCTTCTGCTTCATCGGGTCTTTGTACTCTAGCTTCGCTCTGTGTGTAGAGATGGTTTTTGTTAGTTTTTGACAGAGGGTTGCCCTGGCAGCCTGGAACTCGCCCTGTAGCCCAGGCTGGCCTCATACCTGCTGTGTGGGAGGAATCTGACCCACCAGCCTCCACCTCTGACTCACACCTCTGCGTGTAGAATCCATTTTCTTCCCTCCCACTGATGTGCCCAAGCTGTAATGGAGCCCTCACTCGTTCCAGGCCAGCATTTACAGATAAAGGACTGCCACGCCCCTCCCACAGCAAAGCCATTAACCCCTCCTGTGTGTCCACTGTCCCATCAGCCACATTTGGAAGGTTCTGGAAGCACAAGCCCTATCTCACCAGGAAAAAGCCATCAGCTGTTTCTTATGGTTGAGCCCCAAGGGTCACACACCAGAAGCCACCCTCGGCTGCCTGGCTGACCCAGGTCCCACGCCCCTCCCTCCCCTCTCATCCCCAG
Seq C2 exon
GGCCCCTGGGCAGCCCAAGATCGACCACCTTCGGAGGCTACACCTGGGTGCCTACCCCACGGAGGAGTGCAAAGCCTGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315:ENSRNOT00000015257:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116353=Med16=FE(10.1=100)
A:
NA
C2:
PF116353=Med16=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGTGAGCCCGATGAG
R:
CAGGCTTTGCACTCCTCCG
Band lengths:
279-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]