MmuINT0097637 @ mm9
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64539602-64540290:+
Coord C1 exon
chr9:64539602-64539730
Coord A exon
chr9:64539731-64540161
Coord C2 exon
chr9:64540162-64540290
Length
431 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
GCATTCTGCATGCCAAACAGGAT
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGA
Seq A exon
GTAAGCTACCCTAACCTGGGAAAGTTGCTTCTTTCAACCCCATCCTCCCCATACCCAACCCCCATCCAGGGTACTGGGCTCCTGTATTCCAGACTTTGAGGACAACTTCTGGGGAAGACTGAAGGCTAACCCTATACACTCATGCTGTGAGGATTTCTTTCCTCTTTAGATAGGGCTGAGGTGTGATAGGCATAGGAAGGAGGGGCCAGATGAAGGCAGGATTTTCCAGCTCTTTAAATGAGTTCAGGAGGGAGAGGTGTGCACTGACTCTACCCATCCCCAGCTATCTATGCACAATGGGCAATCTAGTTCAATAGGCTCCACTGTGGGTGGGACACAATGATCTCTTGCCATGAACTTCTCCACCTGGAGTGGGAGGGGTGGAGTGTGGCTGTGTCTCACTGTCTACTTGCATTCTGCATGCCAAACAG
Seq C2 exon
GATGTGCCCCTGGAACCTTTGGATATGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCACGTCACTGGTACCTGTTACTGTAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466-Megf11:NM_001134399:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(27.1=30.2),PF0005319=Laminin_EGF=PU(60.9=65.1)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGGGAAGGACTGTGGGC
R:
TGGTCACACCTGATTCCTTTGA
Band lengths:
241-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: