RnoINT0091339 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70170034-70170649:+
Coord C1 exon
chr8:70170034-70170162
Coord A exon
chr8:70170163-70170520
Coord C2 exon
chr8:70170521-70170649
Length
358 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGC
5' ss Score
6.31
3' ss Seq
GCACTCTGCATGCCATATAGGAT
3' ss Score
6.08
Exon sequences
Seq C1 exon
GTTGCCCTGCAGCATTTTTTGGGAAGGATTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGGCGCCACTGTGAACAGA
Seq A exon
GTAAGCTGCACTAACCTGGGAAAGTTGTATCAACCCCATCCTCTGCATACCCAACACCCATCCAGGGCACCGGGCTCCTGAACTCCAGACTTTGAGGATGATTTCTGGGGAAGACTGAAAGCTAACCCTATACACTCATGCTGTGGGGCTCTCTCTCCACTTTAGATAGGGCTGGGGTGTGGTGGGCAGAGCAAGGAGGGGCCAGATGAAAGCAGGATTTTCCAGCTCTTTAAATGAGTTCAGGAGGGAGAGGTGTGTTCTGACTCTACCCATCCCCAGCTAACTGGATTGCACAATGGGGGAACGGGTGGAGTGTGGCTGTGTCTCACCGTCTACTTGCACTCTGCATGCCATATAG
Seq C2 exon
GATGTGCCCCTGGAACCTTTGGATACGGGTGTCAGCAGCTATGTGAGTGCATGAACAATGCCACTTGTGACCATGTCACTGGTACCTGTTACTGCAGCCCGGGATTCAAAGGAATCAGGTGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(30.2=29.5),PF0005319=Laminin_EGF=PU(82.9=65.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCTGCAGCATTTTT
R:
TGGTCACACCTGATTCCTTTGA
Band lengths:
256-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]