MmuINT0098142 @ mm10
Intron Retention
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:79133769-79134801:-
Coord C1 exon
chr7:79134652-79134801
Coord A exon
chr7:79134547-79134651
Coord C2 exon
chr7:79133769-79134546
Length
105 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GACACTCCAGTGGTTTCCAGGTC
3' ss Score
2.94
Exon sequences
Seq C1 exon
GTTGACCTGGGCACTCAGAGGCAAGTGACAGGAATCATCACCCAGGGGGCCCGTGACTTTGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCCACAGTGATGATGGTGTGCAGTGGACTGTATATGAGGAGCAAGGAAGCAGCAAG
Seq A exon
GTGGGTGTCTGTCCGGCTACAATTCCTGGGATACTGTGGGTTTCTGATGGGTGGGGGAGGTGGCCGACTGTGGAGCACTACTCCTGACACTCCAGTGGTTTCCAG
Seq C2 exon
GTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTTCGAGAAACCCTTCATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGCATAACCGCATCACCCTGCGCCTGGAGCTGCTGGGCTGTTAATGCTCAGTCCTGCCAGCCCAAACGATGAGGATGGCCAGAGGCTGAGGGGCCTCCTGGCCCTGCCTCCCAGGCCCTGCTGCCTTCTGTGGCTGACGACCTTCTTGGCCTTCCCTTCTGATTGTACTGGGGCTGGAGGCAGGAAGGGCCAGGGGATTTCAGAGTTGCCCTTCACCCTTTCCCTCACCCTGCAGCCCCCACAGGCCTCCTGCTAGCCCCCTTCTCTCAGGCATTCTGGGGGAGTTGGACAGGTCTGAGATGAATAGAGAAGAAGAGTGAAGTTGGGGTATGTGGGCTATCTGTACCAACCACCCCAAGTCCTAAACTTCCTGCCAGGGCTTGACTCAGGACTGAAGGGAGCCCCTGACTGCCCATCCCTCTCTGCACACCACACATTCCTCCATGTTCCATTCCGGGAAGGAGAGGCCCACGTCCGCTTGCTGTCCCTTGGGTCACCAGGTCCTGCCTCTTATCTCCTGAGACGCCTCTTGACCCTTGCACTGGAGCCTCAGTTGACAAGGAGACTGGCGGGTCTGGAGAGGTCGGTGGCTCTGGGTGGTTGACAGGTTGGCTGTGGGACCTCTGCTGGCTTGCTACCCAAGTTAACAAGCAGATTCCAAAATACATTCGTGTTCTCCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605:ENSMUST00000032825:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(35.5=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(29.7=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTTTGGCCACATCCAGT
R:
ACTGAGCATTAACAGCCCAGC
Band lengths:
244-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types