RnoINT0091841 @ rn6
Intron Retention
Gene
ENSRNOG00000017510 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:RGD Symbol;Acc:3083]
Coordinates
chr1:140845479-140846505:-
Coord C1 exon
chr1:140846356-140846505
Coord A exon
chr1:140846254-140846355
Coord C2 exon
chr1:140845479-140846253
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GACACTCCAATTGTTTCCAGGTC
3' ss Score
7.51
Exon sequences
Seq C1 exon
GTTGACCTGGGCACTCAGAAAAAAGTGACAGGAATTATCACCCAGGGGGCCCGTGACTTTGGCCACATCCAGTATGTGGCATCCTATAAGGTAGCCCACAGTGATGATGGTGTGCAGTGGACCGTATATGAGGAACAAGGAACCAGCAAG
Seq A exon
GTGGGTGTCTGTCCGGCTGCAAGTCCTGGGATGCTGTGGGGTTCTGATGGGTGGAGGAGGTGGCAGACTGTGGGGCACTCCTGACACTCCAATTGTTTCCAG
Seq C2 exon
GTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTTTGAGAAACCTTTCATGGCTCGCTATGTGCGTGTCCTTCCACTGTCCTGGCATAACCGTATCACCCTGCGCCTGGAGCTGCTGGGCTGTTAGTGCCCAGTCCTTCCAGCCCAAGTGACGAGGACGGCCAGAGGCTGAGGGGCCTCCTGGCCCTGCCTCCCAGGCCCTGCTGCCTTCTGTGGCTGACACCTTCTCAATCCTCCCTCTTGATTGCACTGGGACTACAGGCAGGAAGGGCAAGGGGGTTTCAGAGTTGCCCCTCACCCTTCCCCTCACCCTGCAGCCCCCACAGGCCTCCTGCTAGCCCCTTCTCTCAGGCATTCTGGGGGAGTTGGACAGGTCTGAGATGAATAGAGAAGAAGAGTGAAGTTGGGGTATGTGGGCTGCTGTACCAACCACCCCAAGTCCTAAACTTTCTCCAGGGGTTGACTCAAGACTAAAGGGAACCTCTGGTTGCCCACCCGTCTCTGCACACCGCACATCCCTCCATGTTCCATTCCTGGAAGGAGAGGCCCACGTCCGCTTGCTGCCCCTTGGGTCACCAGATCCTGCCTCTTATCTCCTGAGACCCCTCTTGACCCTCGCTCTGGAGCCTCGGTTGACAAGAGGACTGTCGGGTCTGGAGAGATAGATGGGCTCTGGGTGGTTGGCGAGCTGGCTATGGGACCTCTGCTGGCTTGCTACCCAAGCTAACAAGCAGATTCCAAAATACATTTGTGCTCTCCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017510:ENSRNOT00000024253:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.031
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(35.5=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(29.7=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACTTTGGCCACATCCAGT
R:
TGGAAGGACTGGGCACTAACA
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]