BtaINT0092124 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003300 | MFGE8
Description
milk fat globule-EGF factor 8 protein [Source:HGNC Symbol;Acc:HGNC:7036]
Coordinates
chr21:20889913-20890959:-
Coord C1 exon
chr21:20890804-20890959
Coord A exon
chr21:20890683-20890803
Coord C2 exon
chr21:20889913-20890682
Length
121 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GACACCTCCTCTTCCACCAGATT
3' ss Score
8.7
Exon sequences
Seq C1 exon
ATTGACCTGGGCTCCCAGAAGCGAGTCACGGGCATCATCACCCAGGGTGCCCGAGACTTTGGCCACATTCAATATGTGGCTGCCTACAGGGTGGCCTATGGTGATGATGGTGTGACCTGGACTGAGTACAAGGACCCGGGGGCCTCAGAAAGCAAG
Seq A exon
GTGAGTGTGTGTCCAGCTATCCTGCCTTCCCCACTCCAGGGGTGCCCTGCGAGTCAGATCTGGGGTCTGAGGGGGAGGAGGGCTGGGTCTGAGGGCCTCCTGACACCTCCTCTTCCACCAG
Seq C2 exon
ATTTTCCCTGGTAACATGGACAATAATTCCCACAAGAAGAACATATTTGAGACGCCGTTCCAGGCTCGCTTCGTGCGGATCCAGCCCGTGGCCTGGCACAACCGTATCACCCTGCGAGTGGAGCTGCTGGGCTGTTAGTGGTAGGCCTGGCCGAAGTGACCGGAGGGGCCCTGGGGCAGCTGCTCCTTTCTGTGGACCTGCTGCCTCCTCCGCCCGCCCTCCTGATTGTAGCTGACCTGGGGGCAGGCAGTGTCTCCCTCCCAGTCACCTCTCCCTCCCTCCTCTTCCTCGCCCCCGCCCAGGGGTCTCTGGCACCCAGTCCTCAAGCCATCCCGTTTTCTTAGGCACGGTGGGAGCTGAGTAGGTCTGGGATGGACAGGGAAGGGCAAAGTACAGAGCGTGGGTGACCTTTGCCTCTCCAGGTCCCCACGTCCAGCCCCCCGTGTCCTTCCTGCACTGCTCCCACACCCCACACCCCCAGGGCCCTGAGGAATAGACAGGCCCCGAGGCCCCAGGCTGGAGAGAATAGCCCGAGGCATGATGCCGCACTCCTGGCCCCGAGACTTCCCCTTCATCCCCTCCCACTCCCCACAGACCCCTTTTGACTCTCATCCTGAAGCCTAGAAAGAGGTAGAAGGCGGGGTGGGGTGGGTCTGTGGAGTGACGGGGGAGGAGGCGGGTGAGCATGGGAAAGGCGGGGAGCCCCTCTGTGCTGGTTCTTTACCCAGAGTACACAGGCAGCTTCCAAAATATATTTATATCACCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003300:ENSBTAT00000004272:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.089
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(36.4=100)
A:
NA
C2:
PF0075420=F5_F8_type_C=PD(29.3=89.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTGTGACCTGGACTGAGT
R:
GTCCACAGAAAGGAGCAGCTG
Band lengths:
247-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]